Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   ACHWYH_RS00055 Genome accession   NZ_CP172084
Coordinates   10911..11258 (+) Length   115 a.a.
NCBI ID   WP_005664263.1    Uniprot ID   -
Organism   Haemophilus influenzae strain GA81666     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5911..16258
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHWYH_RS00040 - 7657..9216 (+) 1560 WP_112074438.1 phosphoethanolamine transferase -
  ACHWYH_RS00045 lspA 9286..9801 (+) 516 WP_005655980.1 signal peptidase II -
  ACHWYH_RS00050 ispH 9798..10742 (+) 945 WP_021034822.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ACHWYH_RS00055 comE1/comEA 10911..11258 (+) 348 WP_005664263.1 helix-hairpin-helix domain-containing protein Machinery gene
  ACHWYH_RS00060 - 11305..12063 (-) 759 WP_005647892.1 DeoR/GlpR family DNA-binding transcription regulator -
  ACHWYH_RS00065 ltnD 12234..13139 (+) 906 WP_015702001.1 L-threonate dehydrogenase -
  ACHWYH_RS00070 otnK 13142..14383 (+) 1242 WP_005647886.1 3-oxo-tetronate kinase -
  ACHWYH_RS00075 otnC 14380..15012 (+) 633 WP_005647883.1 3-oxo-tetronate 4-phosphate decarboxylase -
  ACHWYH_RS00080 otnI 15015..15791 (+) 777 WP_005647880.1 2-oxo-tetronate isomerase -

Sequence

Protein


Download         Length: 115 a.a.        Molecular weight: 12451.33 Da        Isoelectric Point: 8.0084

>NTDB_id=1065040 ACHWYH_RS00055 WP_005664263.1 10911..11258(+) (comE1/comEA) [Haemophilus influenzae strain GA81666]
MKLMKTLFTSFVLCGSLAAGSTFAEDKVVEQTTQAVVTTQTDSQVAPAMMGDKLNINIATASEIQKSLTGIGAKKAEAIV
QYREKHGNFTNAEQLLEVQGIGKATLEKNRDRIIF

Nucleotide


Download         Length: 348 bp        

>NTDB_id=1065040 ACHWYH_RS00055 WP_005664263.1 10911..11258(+) (comE1/comEA) [Haemophilus influenzae strain GA81666]
ATGAAATTAATGAAAACATTATTCACTTCGTTTGTATTGTGTGGGTCACTTGCAGCTGGTTCCACTTTTGCTGAAGACAA
GGTGGTTGAGCAAACAACTCAAGCTGTTGTGACCACTCAAACGGATTCACAAGTAGCACCAGCTATGATGGGAGATAAAT
TGAATATTAACATAGCAACTGCCAGTGAAATTCAAAAATCCCTAACTGGCATTGGTGCGAAAAAAGCAGAAGCGATAGTA
CAATATCGTGAAAAACACGGTAATTTTACTAATGCAGAACAGCTTTTAGAAGTACAAGGAATTGGCAAAGCAACACTAGA
GAAAAATCGTGATCGTATAATCTTTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

82.143

97.391

0.8
  comEA/comE1 Glaesserella parasuis strain SC1401

57.009

93.043

0.53
  comEA Vibrio campbellii strain DS40M4

39.286

97.391

0.383

Multiple sequence alignment