Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   ACHWYG_RS09155 Genome accession   NZ_CP172082
Coordinates   1816680..1817396 (+) Length   238 a.a.
NCBI ID   WP_005648032.1    Uniprot ID   -
Organism   Haemophilus influenzae strain GA54827     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1811680..1822396
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHWYG_RS09135 - 1812619..1813149 (-) 531 WP_038440114.1 DsbE family thiol:disulfide interchange protein -
  ACHWYG_RS09140 nrfE 1813149..1815056 (-) 1908 WP_118804262.1 heme lyase NrfEFG subunit NrfE -
  ACHWYG_RS09145 suhB 1815165..1815968 (-) 804 WP_005648036.1 inositol-1-monophosphatase -
  ACHWYG_RS09150 comN 1816168..1816680 (+) 513 WP_005648034.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  ACHWYG_RS09155 comO 1816680..1817396 (+) 717 WP_005648032.1 type II secretion system protein J Machinery gene
  ACHWYG_RS09160 comP 1817411..1818094 (+) 684 WP_005648030.1 DUF2572 family protein Machinery gene
  ACHWYG_RS09165 comQ 1818087..1818374 (+) 288 WP_005648029.1 DUF5374 domain-containing protein Machinery gene
  ACHWYG_RS09170 recC 1818420..1821785 (+) 3366 WP_118804263.1 exodeoxyribonuclease V subunit gamma -
  ACHWYG_RS09175 nrdR 1821840..1822289 (+) 450 WP_005648026.1 transcriptional regulator NrdR -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 26771.17 Da        Isoelectric Point: 9.5508

>NTDB_id=1065035 ACHWYG_RS09155 WP_005648032.1 1816680..1817396(+) (comO) [Haemophilus influenzae strain GA54827]
MMKVLLKGQTLLALMISLSLSSLLLLSISHFYVQIQTQNQHMLLHLKLQAELQRTLQLIGKDLRRLGFRALNAKLTESNL
SLFELDEQGTAIFISQEDNAPPNSCVLFFYDLNKNGCIGKGSPKTCMKKGKNTSKSSTEELFGYKVSNKMIKTKLTYQSV
IPTNCTAETCKRAFQQTACNAGGGWADLLDNNEYEIIRLQFNWLIEGKGLEIKLKGNLKQTPNISYETSLVVALWNQK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=1065035 ACHWYG_RS09155 WP_005648032.1 1816680..1817396(+) (comO) [Haemophilus influenzae strain GA54827]
ATGATGAAAGTATTATTAAAAGGGCAAACCCTATTAGCGCTGATGATTTCACTGTCTTTGTCGTCTTTATTATTGCTAAG
CATTTCGCATTTTTATGTGCAAATACAAACGCAAAATCAACACATGTTATTACATTTAAAGTTACAAGCTGAATTACAAC
GAACATTACAGTTAATAGGTAAAGATCTTCGCCGATTAGGATTTCGAGCATTAAATGCAAAACTGACGGAAAGCAATTTA
TCTTTATTTGAATTAGATGAACAAGGCACAGCTATTTTTATTAGCCAAGAAGATAATGCGCCACCTAATAGCTGCGTGTT
GTTCTTTTATGATTTAAATAAAAATGGCTGTATTGGCAAAGGTTCGCCGAAAACCTGTATGAAAAAAGGTAAAAATACAT
CTAAAAGTAGTACTGAAGAATTATTCGGCTATAAAGTGAGTAACAAAATGATAAAAACCAAACTGACCTATCAAAGTGTT
ATTCCTACTAATTGCACGGCAGAAACTTGTAAACGTGCTTTTCAACAAACCGCTTGTAACGCTGGTGGTGGATGGGCAGA
TTTATTAGATAACAACGAATATGAAATCATTAGGTTACAATTTAATTGGTTAATTGAAGGCAAAGGATTAGAAATCAAGC
TAAAAGGAAATTTAAAACAAACCCCAAATATCAGTTATGAAACATCCCTTGTTGTTGCACTATGGAATCAAAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

99.16

100

0.992

Multiple sequence alignment