Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Machinery gene
Locus tag   ACHWYG_RS09165 Genome accession   NZ_CP172082
Coordinates   1818087..1818374 (+) Length   95 a.a.
NCBI ID   WP_005648029.1    Uniprot ID   -
Organism   Haemophilus influenzae strain GA54827     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1813087..1823374
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHWYG_RS09140 nrfE 1813149..1815056 (-) 1908 WP_118804262.1 heme lyase NrfEFG subunit NrfE -
  ACHWYG_RS09145 suhB 1815165..1815968 (-) 804 WP_005648036.1 inositol-1-monophosphatase -
  ACHWYG_RS09150 comN 1816168..1816680 (+) 513 WP_005648034.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  ACHWYG_RS09155 comO 1816680..1817396 (+) 717 WP_005648032.1 type II secretion system protein J Machinery gene
  ACHWYG_RS09160 comP 1817411..1818094 (+) 684 WP_005648030.1 DUF2572 family protein Machinery gene
  ACHWYG_RS09165 comQ 1818087..1818374 (+) 288 WP_005648029.1 DUF5374 domain-containing protein Machinery gene
  ACHWYG_RS09170 recC 1818420..1821785 (+) 3366 WP_118804263.1 exodeoxyribonuclease V subunit gamma -
  ACHWYG_RS09175 nrdR 1821840..1822289 (+) 450 WP_005648026.1 transcriptional regulator NrdR -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 11003.78 Da        Isoelectric Point: 9.2205

>NTDB_id=1065037 ACHWYG_RS09165 WP_005648029.1 1818087..1818374(+) (comQ) [Haemophilus influenzae strain GA54827]
MNKGISFITLLFSLALFSVLFLVFNQWTASQRKSAVKTYQDFQAIQIAENQAQRQFLGLACEQLIQQNGLTFRIQCENER
IIVRYPTSEILIKTQ

Nucleotide


Download         Length: 288 bp        

>NTDB_id=1065037 ACHWYG_RS09165 WP_005648029.1 1818087..1818374(+) (comQ) [Haemophilus influenzae strain GA54827]
ATGAATAAAGGAATATCTTTTATTACATTGTTATTTTCTTTAGCTTTATTTAGCGTTTTATTTCTTGTTTTTAATCAATG
GACGGCAAGCCAAAGAAAAAGTGCGGTAAAAACTTATCAAGATTTTCAGGCAATACAGATTGCGGAGAATCAAGCTCAAC
GCCAATTTTTAGGGTTAGCTTGTGAACAATTGATACAACAAAATGGCTTAACTTTTCGTATTCAATGTGAAAATGAACGT
ATTATTGTGCGTTATCCTACGAGTGAAATTTTGATAAAAACTCAGTAA

Domains

Predicted by InterproScan.

Family of unknown function (DUF5374) (DUF5374)

(53-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Haemophilus influenzae Rd KW20

96.842

100

0.968

Multiple sequence alignment