Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ACHMW6_RS30285 Genome accession   NZ_CP171977
Coordinates   6082340..6083809 (-) Length   489 a.a.
NCBI ID   WP_395402608.1    Uniprot ID   -
Organism   Pseudoduganella sp. UC29_106     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 6077340..6088809
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHMW6_RS30275 (ACHMW6_30270) - 6077829..6078935 (-) 1107 WP_395402604.1 ribonucleotide-diphosphate reductase subunit beta -
  ACHMW6_RS30280 (ACHMW6_30275) - 6079038..6081953 (-) 2916 WP_395402606.1 ribonucleoside-diphosphate reductase subunit alpha -
  ACHMW6_RS30285 (ACHMW6_30280) pilR 6082340..6083809 (-) 1470 WP_395402608.1 sigma-54-dependent transcriptional regulator Regulator
  ACHMW6_RS30290 (ACHMW6_30285) - 6083806..6085503 (-) 1698 WP_395402610.1 sensor histidine kinase -
  ACHMW6_RS30295 (ACHMW6_30290) - 6085505..6085753 (-) 249 WP_395402612.1 PP0621 family protein -
  ACHMW6_RS30300 (ACHMW6_30295) - 6085750..6086554 (-) 805 Protein_5895 inner membrane protein YpjD -
  ACHMW6_RS30305 (ACHMW6_30300) - 6086698..6087684 (-) 987 WP_395402614.1 M48 family metallopeptidase -
  ACHMW6_RS30310 (ACHMW6_30305) - 6087684..6088706 (-) 1023 WP_395402616.1 YjgN family protein -

Sequence

Protein


Download         Length: 489 a.a.        Molecular weight: 52780.72 Da        Isoelectric Point: 4.9911

>NTDB_id=1064701 ACHMW6_RS30285 WP_395402608.1 6082340..6083809(-) (pilR) [Pseudoduganella sp. UC29_106]
MRSPRVLVVDDEADLRELLEITLLKMGLDVDSAETLAEARRRYAESEYSLVLTDMRLPDGLGLELVRDVTASGKNIPIAV
VTAFGSADNAVVALKAGAFDYVSKPVQLDQLRVMVQSALKLNDAMPAAADKPAVTSRLRGHSAAIQALRAQIGRLARSMA
PIAINGESGSGKELAAREIHAQSSRADKAFIAVNCGAIPEALMEAEFFGYRKGAFTGAADERDGFFQAANGGTLMLDEVA
DLPLAMQVKLLRAIQERRVRKIGATSEEPVDVRIISATHKNLEKLVEEGLFRQDLFYRLNVIELRLAPLRERLDDLEELT
EAILSRLGTFEHKVTLGPGVLDALRSYSFPGNVRELENILERALAFSNDGVINIEDLALKGAPYAAPPPVTAPAAPAFVS
VPAVPAPVVTPAPTAPAAAAPVSAMPPLPAFDVLPSDLPAYLAAVERDIIIRALAQTNYNRTQAAQLLGISFRQLRYQMQ
KLNIQEPEA

Nucleotide


Download         Length: 1470 bp        

>NTDB_id=1064701 ACHMW6_RS30285 WP_395402608.1 6082340..6083809(-) (pilR) [Pseudoduganella sp. UC29_106]
ATGAGGTCTCCACGTGTCCTGGTCGTCGATGACGAAGCCGACCTGCGCGAATTGCTGGAAATAACGCTGCTGAAAATGGG
GCTGGACGTGGACAGCGCCGAAACCCTGGCCGAAGCGCGCCGCCGCTACGCCGAGAGCGAGTATTCCCTGGTGCTGACCG
ATATGCGCCTGCCGGACGGCCTGGGCCTGGAGCTGGTGCGCGACGTGACGGCCAGCGGCAAGAATATCCCGATCGCCGTG
GTGACAGCCTTCGGCAGCGCCGACAACGCAGTGGTGGCGCTGAAGGCGGGCGCCTTCGATTACGTCAGCAAGCCGGTGCA
ACTGGATCAGCTGCGCGTGATGGTGCAGTCGGCCCTGAAGCTGAACGATGCTATGCCTGCCGCGGCGGACAAGCCCGCCG
TCACCAGCCGCCTGCGCGGCCACTCGGCCGCCATCCAGGCGCTGCGCGCCCAGATCGGACGCCTGGCGCGTTCGATGGCG
CCGATCGCCATCAATGGCGAGTCGGGCAGCGGCAAGGAGCTGGCGGCGCGCGAGATCCACGCCCAGAGTTCGCGCGCGGA
CAAGGCTTTCATCGCCGTCAACTGCGGCGCCATTCCGGAAGCGCTGATGGAGGCCGAGTTCTTCGGCTACCGCAAGGGCG
CCTTCACCGGCGCGGCCGACGAGCGCGACGGCTTCTTCCAGGCCGCCAATGGCGGCACCCTGATGCTGGACGAGGTGGCC
GACCTGCCGCTGGCCATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAGCGGCGCGTGCGCAAGATCGGCGCCACGTCCGA
GGAGCCGGTGGACGTTCGCATCATCAGCGCCACCCACAAGAACCTGGAAAAGCTGGTGGAGGAGGGCCTGTTCCGCCAGG
ACTTGTTCTACCGCCTGAACGTGATCGAGCTGCGCCTGGCGCCGCTGCGCGAACGGCTCGACGACCTGGAAGAACTCACC
GAGGCGATCCTGTCGCGGCTCGGCACCTTCGAACACAAGGTCACGCTGGGGCCGGGCGTGCTCGACGCGCTGCGCTCGTA
TTCCTTCCCGGGCAATGTGCGCGAGCTGGAGAACATTCTTGAGCGGGCGCTGGCTTTCTCCAACGATGGCGTTATTAATA
TAGAGGACCTGGCGCTGAAGGGCGCGCCTTACGCTGCGCCGCCGCCGGTGACTGCGCCCGCTGCGCCGGCCTTTGTCTCC
GTCCCGGCCGTGCCGGCGCCTGTCGTCACGCCTGCGCCGACCGCGCCTGCTGCGGCCGCGCCAGTGTCGGCCATGCCGCC
GCTGCCGGCCTTCGATGTCCTGCCCAGCGACCTGCCGGCCTATCTGGCTGCTGTCGAGCGTGACATCATCATCCGCGCCC
TGGCCCAGACCAACTACAACCGCACCCAGGCCGCCCAATTGCTGGGTATCAGCTTCCGCCAGCTGCGCTACCAGATGCAG
AAGCTCAACATCCAGGAGCCGGAGGCGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(442-482)

Sigma-54 interaction domain (Sigma54_activat)

(139-304)

Response regulator receiver domain (Response_reg)

(6-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

50.412

99.387

0.501
  pilR Acinetobacter baumannii strain A118

42.71

99.591

0.425

Multiple sequence alignment