Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   ACHFJ9_RS21620 Genome accession   NZ_CP171887
Coordinates   2939586..2940218 (+) Length   210 a.a.
NCBI ID   WP_005381432.1    Uniprot ID   U2ZZI4
Organism   Vibrio sp. D3     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2934586..2945218
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHFJ9_RS21595 (ACHFJ9_21595) - 2934606..2936525 (+) 1920 WP_395357483.1 ABC transporter ATP-binding protein -
  ACHFJ9_RS21600 (ACHFJ9_21600) - 2936522..2937010 (+) 489 WP_395356264.1 TIGR02444 family protein -
  ACHFJ9_RS21605 (ACHFJ9_21605) - 2937098..2938105 (+) 1008 WP_046874535.1 hydrolase -
  ACHFJ9_RS21610 (ACHFJ9_21610) - 2938139..2938351 (+) 213 WP_005397677.1 YheU family protein -
  ACHFJ9_RS21615 (ACHFJ9_21615) - 2938476..2939345 (+) 870 WP_005397679.1 phosphoribulokinase -
  ACHFJ9_RS21620 (ACHFJ9_21620) crp 2939586..2940218 (+) 633 WP_005381432.1 cAMP-activated global transcriptional regulator CRP Regulator
  ACHFJ9_RS21625 (ACHFJ9_21625) - 2940364..2941155 (-) 792 WP_395198200.1 DUF1338 domain-containing protein -
  ACHFJ9_RS21630 (ACHFJ9_21630) astD 2941405..2942862 (-) 1458 WP_395356269.1 succinylglutamate-semialdehyde dehydrogenase -
  ACHFJ9_RS21635 (ACHFJ9_21635) astA 2942891..2943910 (-) 1020 WP_085344615.1 arginine N-succinyltransferase -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23665.48 Da        Isoelectric Point: 7.8388

>NTDB_id=1064669 ACHFJ9_RS21620 WP_005381432.1 2939586..2940218(+) (crp) [Vibrio sp. D3]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMARRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=1064669 ACHFJ9_RS21620 WP_005381432.1 2939586..2940218(+) (crp) [Vibrio sp. D3]
ATGGTTCTAGGTAAACCTCAAACCGACCCAACATTAGAGTGGTTTCTTTCACACTGTCATATTCATAAGTACCCTTCAAA
GAGCACGCTAATTCACGCGGGCGAAAAGGCAGAAACTTTGTACTACATCGTTAAAGGTTCTGTTGCGGTTCTTATCAAAG
ACGAAGAAGGTAAGGAGATGATCCTTTCTTACCTAAACCAAGGAGACTTTATTGGTGAACTTGGTCTATTCGAGGAAGAC
CAAGAGCGCACAGCTTGGGTTCGTGCTAAATCTCCTTGTGAAGTTGCTGAAATTTCTTTCAAGAAATTCCGTCAGCTTAT
CCAAGTAAACCCAGACATCCTAATGCGCCTTTCTGCGCAGATGGCTCGTCGTCTTCAAGTAACTAGCCAAAAAGTGGGTG
ACCTGGCGTTCCTAGACGTAACTGGTCGTATCGCTCAGACGCTTCTGAACCTTGCAAAACAACCAGACGCAATGACTCAC
CCAGACGGCATGCAAATCAAGATCACTCGTCAAGAAATCGGTCAAATCGTTGGCTGTTCTCGTGAGACAGTAGGTCGTAT
CTTGAAAATGTTAGAAGAGCAGAACTTAATCTCTGCGCACGGTAAAACTATCGTGGTTTACGGTACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB U2ZZI4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

98.095

100

0.981
  crp Haemophilus influenzae Rd KW20

75.49

97.143

0.733
  crp Acinetobacter baumannii D1279779

47.826

98.571

0.471

Multiple sequence alignment