Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   ACHFJ9_RS12985 Genome accession   NZ_CP171887
Coordinates   1056816..1059074 (+) Length   752 a.a.
NCBI ID   WP_395357044.1    Uniprot ID   -
Organism   Vibrio sp. D3     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1051816..1064074
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHFJ9_RS12960 (ACHFJ9_12960) - 1052175..1052744 (-) 570 WP_114322529.1 PilZ domain-containing protein -
  ACHFJ9_RS12965 (ACHFJ9_12965) lolC 1052994..1054202 (+) 1209 WP_065645406.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  ACHFJ9_RS12970 (ACHFJ9_12970) lolD 1054195..1054902 (+) 708 WP_005378457.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  ACHFJ9_RS12975 (ACHFJ9_12975) lolE 1054905..1056149 (+) 1245 WP_048626175.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  ACHFJ9_RS12980 (ACHFJ9_12980) - 1056298..1056807 (-) 510 WP_005390643.1 DUF2062 domain-containing protein -
  ACHFJ9_RS12985 (ACHFJ9_12985) comEC 1056816..1059074 (+) 2259 WP_395357044.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACHFJ9_RS12990 (ACHFJ9_12990) msbA 1059106..1060854 (+) 1749 WP_005390646.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  ACHFJ9_RS12995 (ACHFJ9_12995) lpxK 1060860..1061867 (+) 1008 WP_395357047.1 tetraacyldisaccharide 4'-kinase -
  ACHFJ9_RS13000 (ACHFJ9_13000) - 1061848..1062027 (+) 180 WP_005390649.1 Trm112 family protein -
  ACHFJ9_RS13005 (ACHFJ9_13005) kdsB 1062027..1062782 (+) 756 WP_005390653.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 752 a.a.        Molecular weight: 84494.52 Da        Isoelectric Point: 8.3542

>NTDB_id=1064641 ACHFJ9_RS12985 WP_395357044.1 1056816..1059074(+) (comEC) [Vibrio sp. D3]
MTLSEKSWTLALFVASVISSAWWPTIPDWRWLLLGIITTGSIIKLRRGLISIGAIAGFMVVIVHGNVLESQRQALFQAGE
NITIIGKVDSPFTQISHGYEGIVALKKVNSQTLLPFLKPKIRLITPFPLDVNSEFTTSVSLKPITGLRNEAGFDAEKHAM
GKSIIARGVVNKDVTWIIRSTTSLRQAIIADVSEDVSSLHHFSLINALVFADRSWLSKEDWQALRDSGLLHLVSISGLHI
GMAFTFGLVVGGAIRYTLPQYQLLPSLCGLMFAVAYAWLADFSLPTTRAVSVCVIYVVLKYTLVHWASWRVLLLAVALQL
LVQPFASYSMSFWLSYLSVCAVLFAINLIRHQNGGWKAKLKVLLLTQLMLSVLIVPISGYYFSGFSLSSIAYNLAFIPWF
GFIVVPLMFLALFSSLFLEMIAKSLWQLVDWSLQPLSTSIQYAIGSWQPISIEMTGLILAGIVCLVFQRFMFQYAWCLLL
GIVISIKLTSEYDQQHWRIDVLDVGHGLAVIVEKDDKVLLYDTGKAWQNGSIAEQVVTPVLHQRGYESIDTMILSHSDND
HAGGRLFIEDAFSPQRKLSSQNFIGYESCTRGDHWKWQGLNIEVLWPPALVQRAYNPHSCVLRLTDPISMFSMLFTGDIE
TISEWILLREPEKLKSDVMLVPHHGSKSSSNPRFIEAVKPSVAVASLAKNNQWGMPAEHVVAAYRKLDITWLDTGEYGQV
SFSIHRDNWRSETKRSDTFEPWYRQMLRKGVE

Nucleotide


Download         Length: 2259 bp        

>NTDB_id=1064641 ACHFJ9_RS12985 WP_395357044.1 1056816..1059074(+) (comEC) [Vibrio sp. D3]
ATGACTCTCTCAGAAAAAAGTTGGACCTTGGCGTTATTTGTAGCGAGCGTAATTTCGTCAGCTTGGTGGCCGACAATACC
AGATTGGCGTTGGCTGCTGCTGGGAATAATAACCACTGGCTCAATAATCAAATTACGTCGTGGCTTAATTAGCATAGGCG
CAATTGCGGGCTTTATGGTTGTCATCGTCCACGGCAATGTATTGGAGTCTCAGAGACAAGCCCTTTTTCAAGCAGGGGAG
AATATTACCATAATTGGTAAAGTTGACAGCCCTTTTACGCAAATAAGTCACGGATATGAAGGCATTGTGGCTCTAAAAAA
GGTAAATTCTCAAACTCTGTTACCTTTTCTTAAACCTAAAATCCGTCTTATTACGCCTTTTCCACTCGATGTTAACAGTG
AGTTTACGACATCCGTCTCGTTAAAGCCGATTACAGGCCTACGCAACGAAGCTGGTTTTGACGCCGAAAAGCACGCAATG
GGTAAAAGCATTATCGCACGCGGTGTTGTTAACAAGGATGTTACCTGGATTATTCGCTCTACCACATCTTTGCGCCAAGC
CATTATCGCTGATGTTTCGGAGGATGTGTCCTCCCTTCATCATTTCTCGTTAATAAATGCGTTAGTTTTTGCCGATCGCT
CTTGGTTATCTAAGGAGGATTGGCAAGCACTCAGAGACAGTGGTTTACTGCACTTGGTCTCGATTTCGGGCTTACATATT
GGTATGGCGTTCACTTTTGGGCTAGTGGTGGGCGGTGCCATTCGTTATACGTTACCTCAATACCAGCTATTGCCTAGCTT
ATGTGGGCTGATGTTTGCCGTTGCCTATGCTTGGTTAGCGGACTTCTCATTACCTACTACCCGCGCGGTGTCGGTATGTG
TTATTTACGTCGTTCTCAAGTATACCTTAGTGCACTGGGCTTCCTGGCGAGTACTTTTGCTCGCGGTAGCGCTACAACTG
CTTGTTCAACCTTTTGCATCGTATAGCATGAGTTTTTGGTTATCGTATTTGTCAGTTTGCGCAGTGTTGTTCGCAATCAA
TTTGATTCGGCATCAAAACGGGGGCTGGAAGGCGAAGTTAAAAGTGCTATTGCTTACTCAATTGATGTTGAGTGTGTTAA
TCGTGCCTATTAGTGGCTATTACTTTTCTGGTTTCAGTTTGTCATCAATTGCATACAACTTGGCGTTTATTCCTTGGTTC
GGATTTATCGTTGTGCCTTTGATGTTTCTGGCCCTGTTCTCATCTTTATTTCTTGAAATGATAGCAAAGTCTCTGTGGCA
GTTGGTGGACTGGTCATTGCAGCCATTGAGCACGTCAATTCAGTACGCGATAGGCTCCTGGCAACCCATTAGTATAGAAA
TGACAGGGTTGATTCTGGCGGGAATTGTTTGCTTGGTGTTTCAACGATTCATGTTTCAGTACGCGTGGTGTTTGTTACTT
GGCATTGTAATTAGTATTAAGCTCACATCGGAATATGATCAGCAACATTGGCGCATTGATGTACTAGATGTGGGCCATGG
CCTTGCGGTGATTGTAGAAAAAGACGATAAAGTGTTGCTCTATGACACAGGTAAAGCATGGCAAAATGGCAGTATTGCGG
AGCAGGTCGTCACTCCGGTCTTGCATCAACGAGGTTATGAAAGCATCGATACGATGATCCTCAGCCATTCCGACAATGAC
CATGCAGGAGGGCGCTTGTTCATTGAAGATGCCTTTTCGCCACAGCGCAAACTCAGTAGCCAAAACTTTATCGGATATGA
GTCTTGTACTCGCGGCGATCATTGGAAATGGCAAGGGTTAAATATAGAAGTACTTTGGCCTCCTGCTCTTGTTCAACGTG
CATATAATCCGCACTCCTGTGTGCTACGTCTTACCGACCCTATTTCTATGTTCAGTATGCTTTTTACTGGTGATATTGAG
ACCATTAGCGAGTGGATCTTGCTCAGGGAGCCTGAAAAGTTAAAAAGTGATGTGATGTTGGTCCCTCATCATGGTAGTAA
AAGTTCGTCGAATCCTCGCTTTATTGAGGCGGTAAAACCGAGTGTGGCCGTTGCTTCTTTGGCAAAAAATAATCAATGGG
GAATGCCGGCAGAACATGTTGTTGCAGCATATCGCAAGCTTGACATTACTTGGCTTGATACTGGGGAATATGGTCAGGTA
AGCTTCTCTATTCACCGTGATAATTGGCGCTCAGAAACCAAACGTAGCGATACATTTGAGCCTTGGTATAGGCAGATGCT
GCGTAAGGGAGTAGAATGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(208-466)

Metallo-beta-lactamase superfamily (Lactamase_B)

(504-686)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio parahaemolyticus RIMD 2210633

70.612

100

0.706
  comEC Vibrio campbellii strain DS40M4

65.824

100

0.658
  comEC Vibrio cholerae strain A1552

41.987

100

0.422

Multiple sequence alignment