Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaH   Type   Regulator
Locus tag   ACG3JE_RS04980 Genome accession   NZ_CP171736
Coordinates   957373..958677 (-) Length   434 a.a.
NCBI ID   WP_045406827.1    Uniprot ID   -
Organism   Streptococcus parauberis strain DB-M17     
Function   Required for optimal comC expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 952373..963677
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACG3JE_RS04950 (ACG3JE_04950) - 952897..953286 (-) 390 WP_003108421.1 cytidine deaminase -
  ACG3JE_RS04955 (ACG3JE_04955) deoC 953273..953935 (-) 663 WP_003103647.1 deoxyribose-phosphate aldolase -
  ACG3JE_RS04960 (ACG3JE_04960) - 953949..955226 (-) 1278 WP_003102832.1 pyrimidine-nucleoside phosphorylase -
  ACG3JE_RS04965 (ACG3JE_04965) - 955213..955812 (-) 600 WP_003103028.1 class I SAM-dependent methyltransferase -
  ACG3JE_RS04970 (ACG3JE_04970) coaA 956063..956983 (+) 921 WP_003106953.1 type I pantothenate kinase -
  ACG3JE_RS04975 (ACG3JE_04975) rpsT 957052..957284 (+) 233 Protein_962 30S ribosomal protein S20 -
  ACG3JE_RS04980 (ACG3JE_04980) ciaH 957373..958677 (-) 1305 WP_045406827.1 cell wall metabolism sensor histidine kinase WalK Regulator
  ACG3JE_RS04985 (ACG3JE_04985) ciaR 958670..959344 (-) 675 WP_003104260.1 response regulator transcription factor Regulator
  ACG3JE_RS04990 (ACG3JE_04990) - 959459..961996 (-) 2538 WP_003105115.1 M1 family metallopeptidase -
  ACG3JE_RS04995 (ACG3JE_04995) phoU 962060..962713 (-) 654 WP_003103398.1 phosphate signaling complex protein PhoU -
  ACG3JE_RS05000 (ACG3JE_05000) pstB 962779..963537 (-) 759 WP_003104047.1 phosphate ABC transporter ATP-binding protein PstB -

Sequence

Protein


Download         Length: 434 a.a.        Molecular weight: 49668.06 Da        Isoelectric Point: 9.1102

>NTDB_id=1063982 ACG3JE_RS04980 WP_045406827.1 957373..958677(-) (ciaH) [Streptococcus parauberis strain DB-M17]
MNKIKLFLKSGSFDHFFHFFTVFTSIFVIMTFIILQIMRFGVYSTVDNSLNLVAKHSTLYADKAMEQISLFNFDNQNFNE
ATSRYKSSLITDPVGNTDIILYSADGTILNPFDAFSNLNYFKLNPHQLNKIVTPKKTNFYGHEEKFHTVTIKVQSNNYPA
VSYLSAVANVDQLDRANERYENIIILVMSIFWLISIFASIYLAYWSRKPIVESFEKQKSFVENASHELRTPLAVLQNRLE
SLFRKPNETILENSEAIASSLEEVRNMRILTTNLLNLARRDDGIDVKKEEIGASFFEPIFENYKLIAEENGIKFQSFNEV
SYKFVADKALLKQLITILFDNAVKYTAENGNIVILVKTTEKSLLLRVSDNGIGISNSDKERIFDRFYRVDKARTRQIGGF
GLGLALAKQIVVTLKGDITVKDNFPQGTIFQVKL

Nucleotide


Download         Length: 1305 bp        

>NTDB_id=1063982 ACG3JE_RS04980 WP_045406827.1 957373..958677(-) (ciaH) [Streptococcus parauberis strain DB-M17]
ATGAATAAGATAAAATTATTTTTAAAGTCAGGGAGCTTTGATCATTTCTTTCATTTCTTCACTGTTTTTACAAGTATTTT
TGTTATTATGACTTTTATCATATTACAAATTATGCGCTTTGGTGTCTATTCAACAGTTGATAATAGTTTGAATCTTGTTG
CAAAACACTCTACTCTTTATGCTGATAAAGCGATGGAACAGATTTCACTCTTTAATTTTGATAATCAGAATTTTAATGAA
GCGACGAGTCGCTATAAGTCATCTTTGATTACTGATCCTGTTGGTAATACTGACATTATCTTATATAGTGCTGATGGAAC
AATTTTAAATCCCTTTGATGCTTTTTCAAACTTAAATTATTTTAAATTAAATCCACATCAACTTAATAAGATAGTTACCC
CAAAAAAAACAAATTTTTACGGACATGAAGAAAAGTTTCATACTGTCACCATTAAAGTTCAATCAAATAATTATCCTGCC
GTTTCTTATCTCAGTGCGGTGGCAAATGTTGACCAACTTGATCGGGCTAATGAGCGGTATGAGAATATTATTATATTGGT
TATGAGTATCTTTTGGTTAATTTCCATTTTTGCAAGTATCTATTTAGCTTATTGGAGTCGAAAACCTATTGTTGAGAGTT
TTGAAAAGCAGAAGTCATTTGTTGAAAATGCTAGTCATGAATTAAGGACGCCTTTGGCTGTGTTACAAAATCGCTTAGAA
TCTTTGTTTAGGAAGCCAAACGAGACTATCTTAGAGAATAGCGAAGCCATTGCTTCAAGTCTTGAAGAAGTAAGAAACAT
GCGTATTTTGACGACTAATCTCCTAAATTTAGCTAGACGAGATGATGGGATTGATGTAAAGAAAGAAGAAATTGGCGCTT
CATTCTTTGAGCCTATTTTTGAAAATTATAAGCTAATTGCGGAAGAAAATGGGATAAAATTTCAATCATTTAACGAAGTT
TCCTATAAATTTGTCGCTGATAAAGCTTTGTTAAAACAATTAATAACCATCTTATTTGATAATGCTGTGAAATATACAGC
TGAAAATGGGAATATTGTAATCCTCGTTAAAACGACTGAGAAATCACTCTTACTTCGTGTTAGTGATAATGGCATAGGAA
TTTCTAATTCAGATAAAGAGAGAATTTTTGATCGCTTTTATCGGGTTGATAAAGCTAGGACGCGTCAAATTGGTGGATTC
GGTCTAGGCCTAGCATTAGCTAAACAGATTGTGGTCACTTTAAAAGGTGATATTACAGTCAAAGATAATTTTCCTCAAGG
AACAATTTTTCAGGTCAAATTATAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(327-434)

His Kinase A (phospho-acceptor) domain (HisKA)

(218-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaH Streptococcus mutans UA159

55.687

97.235

0.541
  ciaH Streptococcus pneumoniae Rx1

49.772

100

0.502
  ciaH Streptococcus pneumoniae D39

49.772

100

0.502
  ciaH Streptococcus pneumoniae R6

49.772

100

0.502
  ciaH Streptococcus pneumoniae TIGR4

49.772

100

0.502

Multiple sequence alignment