Detailed information NTG0106396

Bioinformatically predicted

Overview

• Name: ruvA
• Type: Machinery gene
• Locus tag: EG65_RS04475
• Genome accession: NZ_CP007603
• Coordinates: 944630..945181 (-)
• Length: 183 a.a.
• NCBI ID: WP_026938779.1
• Uniprot ID: -
• Organism: Helicobacter pylori J166
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 939630..950181

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EG65_RS04450 (EG65_04630)	-	940425..941351 (-)	927	WP_038420851.1	hypothetical protein	-
EG65_RS04455 (EG65_04635)	-	941348..941779 (-)	432	WP_026938814.1	RipA family octameric membrane protein	-
EG65_RS08435	-	941783..944539 (-)	2757	Protein_872	DUF3519 domain-containing protein	-
EG65_RS04475 (EG65_04655)	ruvA	944630..945181 (-)	552	WP_026938779.1	Holliday junction branch migration protein RuvA	Machinery gene
EG65_RS04480 (EG65_04660)	-	945207..947051 (-)	1845	WP_026938778.1	FapA family protein	-
EG65_RS04485 (EG65_04665)	murJ	947144..948604 (+)	1461	WP_026938777.1	murein biosynthesis integral membrane protein MurJ	-
EG65_RS04490 (EG65_04670)	cysS	948605..950002 (+)	1398	WP_026938776.1	cysteine--tRNA ligase	-

Sequence

Protein

• Length: 183 a.a.
• Molecular weight: 20311.95 Da
• Isoelectric Point: 9.4316

>NTDB_id=106396 EG65_RS04475 WP_026938779.1 944630..945181(-) (ruvA) [Helicobacter pylori J166]
MIVGLIGVVEKISALEVHIEVQGVVYGVQVSMRTSALLQTGQKARLKILQVIKEDAHLLYGFLEESEKILFERLLKINGV
GGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIGFFIQDENRPARNEVFLALESLGFKSTEINKV
LKTLKPHLSIEAAIKEALQQLHS

Nucleotide

• Length: 552 bp

>NTDB_id=106396 EG65_RS04475 WP_026938779.1 944630..945181(-) (ruvA) [Helicobacter pylori J166]
ATGATAGTGGGTTTGATAGGGGTTGTGGAAAAAATCTCCGCTTTAGAAGTGCATATAGAAGTGCAAGGGGTTGTTTATGG
GGTGCAAGTTTCTATGCGAACTTCTGCTTTGCTCCAAACGGGTCAAAAAGCGCGTTTGAAAATCTTACAAGTGATCAAAG
AAGATGCGCATCTCTTATACGGGTTTTTAGAAGAGAGCGAAAAAATCCTTTTTGAAAGGCTTTTAAAAATCAATGGGGTA
GGGGGGCGTATCGCTTTAGCCATTCTTTCAAGCTTTTCGCCGAACGAATTTGAAAACATTATCGCTACTAAAGAAGTCAA
AAGACTCCAGCAAGTCCCAGGTATAGGGAAAAAGCTCGCTGATAAGATCATGGTGGATTTGATTGGCTTTTTCATTCAAG
ATGAAAACAGACCCGCACGCAATGAAGTCTTTTTAGCACTAGAGAGTTTGGGCTTTAAAAGCACCGAAATCAATAAAGTT
TTAAAAACCCTAAAACCCCATCTCAGTATAGAAGCAGCGATTAAAGAAGCCTTACAACAACTGCACTCTTAA

Domains

Predicted by InterProScan.

• RuvA, C-terminal domain (RuvA_C) (139-182)

• Helix-hairpin-helix domain (HHH_5) (71-127)

• RuvA N terminal domain (RuvA_N) (1-61)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvA	Helicobacter pylori 26695	95.082	100	0.951
ruvA	Streptococcus pneumoniae TIGR4	33.846	100	0.361
ruvA	Streptococcus pneumoniae R6	33.846	100	0.361
ruvA	Streptococcus pneumoniae D39	33.846	100	0.361