Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   ACG3JJ_RS10070 Genome accession   NZ_CP171733
Coordinates   1970078..1971577 (-) Length   499 a.a.
NCBI ID   WP_013794303.1    Uniprot ID   -
Organism   Streptococcus parauberis strain DB-M5     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1965078..1976577
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACG3JJ_RS10055 (ACG3JJ_10055) amiF 1967125..1968069 (-) 945 WP_003104982.1 ATP-binding cassette domain-containing protein Regulator
  ACG3JJ_RS10060 (ACG3JJ_10060) - 1968062..1969143 (-) 1082 Protein_1937 ABC transporter ATP-binding protein -
  ACG3JJ_RS10065 (ACG3JJ_10065) amiD 1969152..1970078 (-) 927 WP_041828589.1 oligopeptide ABC transporter permease OppC Regulator
  ACG3JJ_RS10070 (ACG3JJ_10070) amiC 1970078..1971577 (-) 1500 WP_013794303.1 ABC transporter permease Regulator
  ACG3JJ_RS10075 (ACG3JJ_10075) amiA3 1971645..1973624 (-) 1980 WP_013794304.1 peptide ABC transporter substrate-binding protein Regulator
  ACG3JJ_RS10080 (ACG3JJ_10080) pbp3 1973957..1975195 (+) 1239 WP_013794305.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  ACG3JJ_RS10085 (ACG3JJ_10085) pbp3 1975319..1976539 (+) 1221 WP_003108558.1 D-alanyl-D-alanine carboxypeptidase PBP3 -

Sequence

Protein


Download         Length: 499 a.a.        Molecular weight: 55818.29 Da        Isoelectric Point: 10.1171

>NTDB_id=1063852 ACG3JJ_RS10070 WP_013794303.1 1970078..1971577(-) (amiC) [Streptococcus parauberis strain DB-M5]
MKKYIFERILRSLISILLVTTLTYVIVFTLVPTNLIFKQDPNYNKMVTTPDKKDNYRNTIFERMGYVNYYNSKELQSKAE
KMDKAVTIEPTAKNKAVYKKFIKQQGKGWTLKEFEESKEFYAVRNIPIYERVWNFFSHILVIDHPWTIQDPKNPNLERYI
RPEMDPAVGPALVGSGTKHKYLLFFDGNFPFIHQNFVSFDLGTSYPTYANIPVIQVITQGQGRSLSEQTKFPSGVTKFSP
IDITSRTYKSPKDADARDRANFGPKDPYTATKNKHAEPSMIANSFKIGIIGVALSYIIGLPIGMLMAYYKDGIFDRFSTA
ATTFMLALPSIALIYIVRFLGSKIGLPDTFPLLGASDPRSYVLPALILGILGTPGTVVWFRRYIVDLQGSDFVRFARAKG
LTEAEISKNHLFKQAMVPIVNGIPQAIVATIAGATLTETVFAFPGMGKMLIDAIKAANNSMVVGLVFIFAVLSILALLAG
DILMTILDPRIKLSSKGGK

Nucleotide


Download         Length: 1500 bp        

>NTDB_id=1063852 ACG3JJ_RS10070 WP_013794303.1 1970078..1971577(-) (amiC) [Streptococcus parauberis strain DB-M5]
ATGAAAAAGTATATATTCGAGCGCATTTTGAGGTCTTTGATTTCAATTTTGTTGGTAACGACATTAACTTATGTCATTGT
TTTTACATTGGTACCAACAAACTTGATTTTTAAACAGGACCCCAACTATAATAAGATGGTGACTACACCAGATAAGAAAG
ATAACTACCGTAATACCATTTTTGAACGCATGGGTTATGTTAATTACTATAATAGTAAAGAACTTCAAAGCAAAGCTGAA
AAAATGGATAAGGCCGTAACGATTGAACCAACTGCTAAAAATAAAGCGGTCTACAAAAAATTCATCAAGCAACAAGGTAA
AGGTTGGACGCTGAAAGAATTCGAAGAAAGCAAAGAATTTTATGCGGTTAGAAATATTCCAATCTATGAACGTGTTTGGA
ACTTCTTTAGTCATATCCTTGTTATTGATCATCCTTGGACGATACAAGATCCAAAGAATCCTAATTTGGAACGCTATATT
AGACCCGAAATGGATCCAGCAGTCGGACCTGCTTTAGTTGGTTCTGGAACTAAGCATAAATACTTGCTCTTCTTTGATGG
GAATTTCCCATTCATTCACCAAAACTTTGTTTCCTTTGACTTAGGAACTTCTTATCCAACCTATGCTAATATTCCTGTAA
TTCAGGTTATCACACAAGGACAAGGTAGAAGTCTATCAGAACAAACTAAATTCCCGTCTGGAGTTACTAAGTTTTCACCA
ATTGATATCACAAGTAGAACTTATAAATCACCTAAAGATGCAGATGCTCGTGACCGAGCTAATTTCGGCCCGAAAGATCC
TTATACAGCAACTAAGAATAAACATGCTGAGCCATCAATGATTGCAAATTCATTTAAAATTGGAATCATTGGTGTTGCCT
TGTCATATATTATTGGGCTACCTATTGGTATGCTTATGGCCTATTATAAAGATGGAATTTTTGATCGATTTTCTACAGCA
GCTACAACATTTATGTTGGCTTTGCCAAGTATTGCCTTGATTTATATTGTTCGCTTCTTGGGTTCGAAAATTGGTTTACC
AGATACTTTTCCATTGTTAGGAGCCAGTGATCCAAGATCTTATGTATTGCCTGCATTAATTTTAGGTATTTTAGGAACGC
CAGGAACCGTTGTATGGTTCCGTCGTTATATCGTTGACTTACAAGGAAGCGATTTTGTTCGATTTGCGCGTGCAAAAGGA
TTAACAGAAGCTGAAATTTCAAAAAATCACCTATTTAAGCAAGCGATGGTACCAATTGTTAATGGTATTCCCCAAGCAAT
TGTTGCAACTATCGCAGGTGCGACACTGACTGAAACAGTCTTTGCCTTCCCAGGTATGGGTAAAATGTTAATTGATGCTA
TTAAAGCAGCAAATAACTCAATGGTCGTTGGACTAGTTTTTATCTTTGCAGTCTTATCAATTCTTGCTTTATTAGCAGGG
GACATTTTAATGACTATCTTAGATCCACGTATTAAATTATCAAGTAAAGGAGGGAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(299-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus thermophilus LMD-9

61.122

100

0.611
  amiC Streptococcus thermophilus LMG 18311

60.922

100

0.609
  amiC Streptococcus salivarius strain HSISS4

60.721

100

0.607

Multiple sequence alignment