Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ACG3JH_RS09440 | Genome accession | NZ_CP171731 |
| Coordinates | 1841657..1842154 (+) | Length | 165 a.a. |
| NCBI ID | WP_003103409.1 | Uniprot ID | A0A0E2UEH7 |
| Organism | Streptococcus parauberis strain DB-M1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1836657..1847154
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACG3JH_RS09420 (ACG3JH_09420) | trxA | 1838425..1838739 (+) | 315 | WP_003102914.1 | thioredoxin | - |
| ACG3JH_RS09425 (ACG3JH_09425) | - | 1838781..1839143 (-) | 363 | WP_003105722.1 | hypothetical protein | - |
| ACG3JH_RS09430 (ACG3JH_09430) | mutY | 1839221..1840360 (-) | 1140 | WP_041828679.1 | A/G-specific adenine glycosylase | - |
| ACG3JH_RS09435 (ACG3JH_09435) | rpsF | 1841346..1841636 (+) | 291 | WP_003104479.1 | 30S ribosomal protein S6 | - |
| ACG3JH_RS09440 (ACG3JH_09440) | ssb | 1841657..1842154 (+) | 498 | WP_003103409.1 | single-stranded DNA-binding protein | Machinery gene |
| ACG3JH_RS09445 (ACG3JH_09445) | rpsR | 1842243..1842482 (+) | 240 | WP_003102945.1 | 30S ribosomal protein S18 | - |
| ACG3JH_RS09450 (ACG3JH_09450) | - | 1843474..1844139 (-) | 666 | WP_003107615.1 | DUF1129 domain-containing protein | - |
| ACG3JH_RS09455 (ACG3JH_09455) | - | 1844224..1845168 (-) | 945 | WP_003105810.1 | magnesium transporter CorA family protein | - |
Sequence
Protein
Download Length: 165 a.a. Molecular weight: 18163.89 Da Isoelectric Point: 4.8894
>NTDB_id=1063750 ACG3JH_RS09440 WP_003103409.1 1841657..1842154(+) (ssb) [Streptococcus parauberis strain DB-M1]
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRTFKSQNGEREADFINCVIWRQPAENLANWAKKGALVGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREGGSSNSYNGGGLNNNSSSSNNSYSAPAQQTPNFGRDDSPFGNSNPMDISD
DDLPF
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRTFKSQNGEREADFINCVIWRQPAENLANWAKKGALVGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREGGSSNSYNGGGLNNNSSSSNNSYSAPAQQTPNFGRDDSPFGNSNPMDISD
DDLPF
Nucleotide
Download Length: 498 bp
>NTDB_id=1063750 ACG3JH_RS09440 WP_003103409.1 1841657..1842154(+) (ssb) [Streptococcus parauberis strain DB-M1]
ATGATTAATAATGTAGTACTAGTTGGTCGTATGACCAAAGATGCAGAACTTCGTTACACACCAAGTCAAGTGGCAGTAGC
TACTTTTACACTTGCTGTTAACCGTACATTCAAAAGTCAAAATGGGGAACGTGAAGCAGATTTCATTAACTGTGTAATCT
GGCGTCAACCAGCTGAGAACTTAGCGAATTGGGCTAAAAAGGGTGCTTTAGTTGGGATTACTGGTCGTATTCAGACTCGT
AATTATGAAAATCAACAAGGGCAACGTGTCTATGTAACTGAAGTGGTTGCGGATAATTTCCAAATGTTGGAAAGCCGTGC
TACACGTGAAGGTGGTTCATCTAACTCTTATAATGGTGGTGGATTAAATAATAATTCTTCATCATCAAACAATAGTTACT
CAGCCCCTGCTCAACAAACACCTAATTTTGGTCGCGATGATAGCCCATTTGGTAATTCAAATCCAATGGATATCTCAGAT
GACGATCTACCATTCTAA
ATGATTAATAATGTAGTACTAGTTGGTCGTATGACCAAAGATGCAGAACTTCGTTACACACCAAGTCAAGTGGCAGTAGC
TACTTTTACACTTGCTGTTAACCGTACATTCAAAAGTCAAAATGGGGAACGTGAAGCAGATTTCATTAACTGTGTAATCT
GGCGTCAACCAGCTGAGAACTTAGCGAATTGGGCTAAAAAGGGTGCTTTAGTTGGGATTACTGGTCGTATTCAGACTCGT
AATTATGAAAATCAACAAGGGCAACGTGTCTATGTAACTGAAGTGGTTGCGGATAATTTCCAAATGTTGGAAAGCCGTGC
TACACGTGAAGGTGGTTCATCTAACTCTTATAATGGTGGTGGATTAAATAATAATTCTTCATCATCAAACAATAGTTACT
CAGCCCCTGCTCAACAAACACCTAATTTTGGTCGCGATGATAGCCCATTTGGTAATTCAAATCCAATGGATATCTCAGAT
GACGATCTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
59.195 |
100 |
0.624 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
57.471 |
100 |
0.606 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
57.547 |
64.242 |
0.37 |