Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   ACG3JH_RS03195 Genome accession   NZ_CP171731
Coordinates   651869..653098 (-) Length   409 a.a.
NCBI ID   WP_003103169.1    Uniprot ID   A0A0E2URT0
Organism   Streptococcus parauberis strain DB-M1     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 646869..658098
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACG3JH_RS03170 (ACG3JH_03170) rplL 646919..647284 (-) 366 WP_003103838.1 50S ribosomal protein L7/L12 -
  ACG3JH_RS03175 (ACG3JH_03175) rplJ 647350..647850 (-) 501 WP_003104757.1 50S ribosomal protein L10 -
  ACG3JH_RS03180 (ACG3JH_03180) clpC 648300..650408 (+) 2109 WP_013793858.1 AAA family ATPase Regulator
  ACG3JH_RS03185 (ACG3JH_03185) - 650431..651168 (-) 738 WP_239639195.1 hypothetical protein -
  ACG3JH_RS03190 (ACG3JH_03190) yihA 651261..651860 (-) 600 WP_003106619.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  ACG3JH_RS03195 (ACG3JH_03195) clpX 651869..653098 (-) 1230 WP_003103169.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  ACG3JH_RS03200 (ACG3JH_03200) - 653303..653818 (-) 516 WP_003104878.1 dihydrofolate reductase -
  ACG3JH_RS03205 (ACG3JH_03205) - 653895..654734 (-) 840 WP_003106617.1 thymidylate synthase -
  ACG3JH_RS03210 (ACG3JH_03210) - 654926..656092 (+) 1167 WP_003104825.1 hydroxymethylglutaryl-CoA synthase -
  ACG3JH_RS03215 (ACG3JH_03215) - 656089..657372 (+) 1284 WP_013793856.1 hydroxymethylglutaryl-CoA reductase, degradative -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 45058.55 Da        Isoelectric Point: 4.4670

>NTDB_id=1063712 ACG3JH_RS03195 WP_003103169.1 651869..653098(-) (clpX) [Streptococcus parauberis strain DB-M1]
MASNRSNEIKVHCSFCGKSQDEVKKIIAGNNVFICNECVALSQEIIKEELAEEVLADLTEVPKPKELLEALNQYVVGQDR
AKRALAVAVYNHYKRISYKESRDEEEVELQKSNIMMIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENI
LLKLIQAADYNVERAERGIIYVDEIDKIAKKGENMSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQIDTK
NILFIVGGAFDGIEEIVKQRLGEKIIGFGQSSRKIDDEASYMQEIIAEDIQKFGLIPEFIGRLPVVAALEQLSIGDLIQI
LTEPKNALVKQYQALLSYDGVELEFNQEALEAIASKAIDRNTGARGLRSIIEETMLDIMFDIPSQEDITKVIITKEAVSG
DSKPILETA

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=1063712 ACG3JH_RS03195 WP_003103169.1 651869..653098(-) (clpX) [Streptococcus parauberis strain DB-M1]
ATGGCAAGTAATCGTAGTAACGAAATCAAGGTTCATTGTTCGTTTTGTGGCAAGAGCCAAGATGAAGTAAAAAAAATTAT
TGCAGGTAACAATGTATTCATTTGTAATGAGTGTGTTGCTTTATCACAAGAAATTATTAAAGAAGAATTAGCTGAAGAAG
TCTTGGCTGATTTGACTGAAGTTCCAAAACCAAAAGAACTTTTAGAAGCTTTAAATCAATATGTAGTCGGTCAAGATCGT
GCTAAACGTGCCTTAGCTGTTGCAGTCTATAATCATTACAAACGGATTTCATATAAAGAAAGCCGTGATGAAGAAGAAGT
GGAACTCCAAAAATCAAATATCATGATGATTGGTCCTACTGGTTCTGGTAAGACTTTCCTAGCTCAAACCTTGGCAAAAA
GCTTAAATGTTCCTTTTGCAATCGCTGACGCTACATCTTTGACAGAAGCTGGATATGTAGGTGAAGACGTTGAGAACATT
CTTTTAAAACTGATCCAAGCAGCGGATTACAATGTTGAACGAGCTGAGCGTGGGATCATTTATGTTGATGAGATTGATAA
AATCGCTAAAAAAGGCGAAAATATGTCAATCACTCGTGATGTTTCAGGTGAAGGTGTCCAACAAGCTTTGCTGAAAATTA
TTGAAGGTACAGTAGCTAGTGTTCCACCACAAGGTGGACGCAAACATCCTAACCAAGAAATGATTCAAATCGATACCAAG
AATATTTTGTTTATCGTTGGTGGTGCTTTTGATGGCATTGAAGAAATTGTTAAACAACGTCTTGGTGAAAAGATTATTGG
TTTTGGTCAAAGTAGTCGTAAGATTGATGATGAAGCCTCATATATGCAAGAAATTATTGCTGAAGATATTCAAAAATTTG
GTTTAATTCCCGAATTTATTGGGCGTTTACCTGTCGTAGCCGCTTTGGAACAGTTATCAATTGGCGATTTAATTCAGATT
CTGACTGAACCAAAAAATGCCTTGGTCAAACAATATCAAGCTTTATTATCATATGATGGTGTTGAACTTGAATTTAATCA
AGAAGCTCTTGAAGCCATTGCTTCAAAAGCGATAGACCGTAATACTGGTGCGCGTGGTTTAAGATCAATTATTGAAGAAA
CCATGTTAGATATCATGTTTGATATACCTAGCCAGGAAGATATTACTAAGGTAATTATTACAAAAGAAGCCGTTTCTGGA
GATAGTAAACCTATCTTAGAAACGGCATAG

Domains

Predicted by InterproScan.

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(312-390)

AAA domain (Cdc48 subfamily) (AAA_2)

(110-305)

ClpX C4-type zinc finger (zf-C4_ClpX)

(12-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0E2URT0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

86.797

100

0.868
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.359

98.044

0.553

Multiple sequence alignment