Detailed information NTG1063711

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: ACG3JH_RS03180
• Genome accession: NZ_CP171731
• Coordinates: 648300..650408 (+)
• Length: 702 a.a.
• NCBI ID: WP_013793858.1
• Uniprot ID: -
• Organism: Streptococcus parauberis strain DB-M1
• Function: degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 643300..655408

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACG3JH_RS03150 (ACG3JH_03150)	-	643514..643960 (-)	447	Protein_613	GtrA family protein	-
ACG3JH_RS03155 (ACG3JH_03155)	-	643976..644929 (-)	954	WP_003103510.1	glycosyltransferase family 2 protein	-
ACG3JH_RS03160 (ACG3JH_03160)	-	645076..645525 (-)	450	WP_013793859.1	hypothetical protein	-
ACG3JH_RS03165 (ACG3JH_03165)	-	645709..646833 (+)	1125	Protein_616	IS3 family transposase	-
ACG3JH_RS03170 (ACG3JH_03170)	rplL	646919..647284 (-)	366	WP_003103838.1	50S ribosomal protein L7/L12	-
ACG3JH_RS03175 (ACG3JH_03175)	rplJ	647350..647850 (-)	501	WP_003104757.1	50S ribosomal protein L10	-
ACG3JH_RS03180 (ACG3JH_03180)	clpC	648300..650408 (+)	2109	WP_013793858.1	AAA family ATPase	Regulator
ACG3JH_RS03185 (ACG3JH_03185)	-	650431..651168 (-)	738	WP_239639195.1	hypothetical protein	-
ACG3JH_RS03190 (ACG3JH_03190)	yihA	651261..651860 (-)	600	WP_003106619.1	ribosome biogenesis GTP-binding protein YihA/YsxC	-
ACG3JH_RS03195 (ACG3JH_03195)	clpX	651869..653098 (-)	1230	WP_003103169.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
ACG3JH_RS03200 (ACG3JH_03200)	-	653303..653818 (-)	516	WP_003104878.1	dihydrofolate reductase	-
ACG3JH_RS03205 (ACG3JH_03205)	-	653895..654734 (-)	840	WP_003106617.1	thymidylate synthase	-

Sequence

Protein

• Length: 702 a.a.
• Molecular weight: 77685.57 Da
• Isoelectric Point: 4.8649

>NTDB_id=1063711 ACG3JH_RS03180 WP_013793858.1 648300..650408(+) (clpC) [Streptococcus parauberis strain DB-M1]
MTNYYGKDPFGSMDDIFNQLMGNTGGYQTENRRYLVNGREMTPEEFQEYRQTGKLSSTAPTQEQGYPQNQKEDGILNQLG
TNLTEEARQGHLDPVIGRNKEIQDTAEILARRTKNNPVLVGDAGVGKTAVVEGLAQAIVAGDVPAAIKNKEIISIDISGL
EAGTQYRGAFEENIQNLIKEVKEAGNVILFFDEIHQILGAGSTGGDSGSKGLADILKPALSRGELTVIGATTQDEYRNTI
LKNAALARRFNEVKVNAPSAEDTFHILMGIRNLYEQHHNVILPDSVLKAAVDYSVQYIPQRSLPDKAIDLIDMTAAHLAA
QHPVTDLKSLETAIASEKDKQEKAVAAEDYELALQTKVRIEELQKQMANHTEGQKVTATINDVAESVERLTGVPVSNMGA
SDLERLKEIGNRLRGHVIGQDQAVQAVAKAIRRNRAGFDDGNRPIGSFLFVGPTGVGKTELAKQLALDMFGSKDAIIRLD
MSEYSDRTAVSKLIGTTAGYVGYDDNQYTLTERVRRNPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTIDFKNT
VIIATSNAGFGNEALTGQEDHDQKIMDRIAPYFRPEFLNRFNGVIEFSHLEKKDLKEIVELMLTEVNQTINKKGITLEVT
EPVKEELIELGYDKAMGVRPLRRVIEQEIRDRITDYYLEHPDDKHLKANLADGQIVISKQDK

Nucleotide

• Length: 2109 bp

>NTDB_id=1063711 ACG3JH_RS03180 WP_013793858.1 648300..650408(+) (clpC) [Streptococcus parauberis strain DB-M1]
ATGACAAACTATTATGGAAAAGACCCTTTTGGTAGCATGGATGACATTTTTAATCAATTGATGGGTAACACAGGCGGTTA
TCAAACTGAAAATCGTCGTTACCTAGTTAATGGGCGTGAAATGACACCTGAAGAATTTCAAGAATATCGACAAACTGGTA
AGCTCAGTTCTACTGCTCCTACTCAGGAACAAGGCTATCCCCAAAATCAAAAAGAAGATGGCATTCTAAACCAATTAGGT
ACCAACTTAACTGAAGAAGCACGACAAGGACACTTAGATCCAGTCATTGGACGAAATAAAGAAATTCAAGATACAGCTGA
AATATTAGCTCGCCGGACCAAGAACAATCCCGTTCTAGTAGGTGATGCGGGGGTTGGTAAAACAGCTGTGGTCGAAGGCT
TAGCCCAAGCTATCGTTGCTGGTGACGTCCCTGCTGCCATTAAAAACAAAGAAATTATTTCTATTGATATTTCCGGCTTA
GAAGCAGGTACTCAATACCGTGGTGCTTTTGAAGAAAATATTCAGAATTTAATTAAAGAAGTTAAAGAAGCCGGGAATGT
TATCCTCTTCTTTGATGAAATTCATCAAATTTTAGGCGCTGGCTCAACAGGTGGTGATTCTGGTTCCAAAGGCTTGGCCG
ATATTCTTAAACCAGCCCTATCTCGTGGCGAGTTGACCGTCATCGGTGCGACAACTCAAGATGAATATCGAAACACTATT
CTGAAAAATGCGGCCTTGGCTCGTCGTTTTAACGAAGTTAAAGTCAATGCGCCTTCTGCCGAAGATACCTTCCACATTTT
GATGGGTATCAGGAATCTTTATGAGCAACACCACAACGTCATTCTTCCGGATTCTGTTTTGAAAGCAGCCGTGGATTACT
CCGTTCAGTACATTCCACAGCGTAGTCTTCCAGATAAAGCCATCGATTTAATTGACATGACGGCTGCCCATTTAGCTGCG
CAACACCCAGTCACTGATTTGAAGAGTCTTGAAACAGCAATTGCTAGTGAGAAAGACAAGCAAGAAAAGGCTGTCGCTGC
AGAAGATTATGAGTTAGCCTTGCAAACTAAAGTACGAATTGAAGAATTACAAAAGCAAATGGCAAACCATACCGAAGGTC
AAAAAGTGACCGCAACCATCAACGATGTCGCCGAATCAGTTGAACGTCTAACCGGCGTACCAGTTTCCAATATGGGCGCA
AGTGACTTAGAACGTTTGAAAGAAATTGGCAACCGACTTAGAGGACATGTCATCGGACAGGATCAAGCTGTTCAAGCAGT
CGCAAAGGCTATCCGTCGTAACCGTGCCGGCTTTGATGATGGCAATCGCCCAATTGGGTCATTCCTCTTTGTTGGTCCGA
CCGGCGTTGGTAAAACGGAATTAGCCAAACAGCTTGCGCTTGACATGTTTGGTTCCAAGGATGCGATCATTCGTTTAGAT
ATGTCAGAATACAGTGATCGCACTGCCGTTTCTAAATTGATTGGGACTACTGCTGGTTATGTTGGTTACGACGACAATCA
ATACACATTAACTGAACGTGTCCGTCGTAATCCATACTCAATTATTTTACTGGATGAAATTGAAAAAGCAGACCCACAAG
TCATTACCCTACTACTCCAAGTATTAGATGATGGTCGTTTAACTGATGGCCAAGGTAATACGATTGACTTCAAAAATACA
GTGATTATTGCTACATCTAATGCTGGTTTTGGCAATGAAGCATTAACGGGTCAAGAAGATCATGACCAAAAAATTATGGA
CCGAATCGCTCCTTATTTTAGACCTGAATTCTTAAATCGTTTTAATGGTGTGATTGAATTCTCACATCTAGAAAAAAAGG
ATTTGAAAGAAATTGTTGAATTAATGTTAACGGAAGTTAATCAAACAATCAATAAAAAAGGTATCACTTTAGAAGTAACA
GAACCTGTTAAAGAGGAACTAATTGAATTAGGATATGACAAAGCTATGGGAGTTAGACCATTACGCCGTGTCATTGAACA
AGAAATCCGTGACCGTATAACAGACTATTATTTGGAACATCCCGATGATAAACATCTAAAAGCAAATTTAGCAGATGGTC
AAATTGTGATTAGTAAACAAGACAAATGA

Domains

Predicted by InterproScan.

• ATPase family associated with various cellular activities (AAA) (AAA) (118-250)

• AAA domain (Cdc48 subfamily) (AAA_2) (443-602)

• AAA lid domain (AAA_lid_9) (259-353)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (610-680)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Lactococcus lactis subsp. cremoris KW2	48.515	100	0.489
clpE	Streptococcus mutans UA159	47.532	100	0.48
clpE	Streptococcus pneumoniae TIGR4	46.968	100	0.474
clpE	Streptococcus pneumoniae Rx1	46.968	100	0.474
clpE	Streptococcus pneumoniae D39	46.968	100	0.474
clpE	Streptococcus pneumoniae R6	46.968	100	0.474
clpC	Bacillus subtilis subsp. subtilis str. 168	44.651	91.88	0.41
clpC	Streptococcus pneumoniae TIGR4	41.617	95.157	0.396
clpC	Streptococcus pneumoniae Rx1	41.617	95.157	0.396
clpC	Streptococcus pneumoniae D39	41.617	95.157	0.396
clpC	Streptococcus thermophilus LMD-9	42.013	89.174	0.375
clpC	Streptococcus mutans UA159	40.399	92.735	0.375
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	41.842	88.177	0.369
clpC	Streptococcus thermophilus LMG 18311	41.44	89.031	0.369