Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   ACGLYC_RS11935 Genome accession   NZ_CP171691
Coordinates   2466195..2466530 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain K12     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2461195..2471530
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGLYC_RS11915 (ACGLYC_11915) gcvT 2461801..2462901 (-) 1101 WP_032866432.1 glycine cleavage system aminomethyltransferase GcvT -
  ACGLYC_RS11920 (ACGLYC_11920) - 2463325..2464995 (+) 1671 WP_007408331.1 DEAD/DEAH box helicase -
  ACGLYC_RS11925 (ACGLYC_11925) - 2465017..2465811 (+) 795 WP_007408330.1 YqhG family protein -
  ACGLYC_RS11930 (ACGLYC_11930) sinI 2465988..2466161 (+) 174 WP_003153105.1 anti-repressor SinI Regulator
  ACGLYC_RS11935 (ACGLYC_11935) sinR 2466195..2466530 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  ACGLYC_RS11940 (ACGLYC_11940) tasA 2466578..2467363 (-) 786 WP_007408329.1 biofilm matrix protein TasA -
  ACGLYC_RS11945 (ACGLYC_11945) sipW 2467428..2468012 (-) 585 WP_015240205.1 signal peptidase I SipW -
  ACGLYC_RS11950 (ACGLYC_11950) tapA 2467984..2468655 (-) 672 WP_020954230.1 amyloid fiber anchoring/assembly protein TapA -
  ACGLYC_RS11955 (ACGLYC_11955) - 2468914..2469243 (+) 330 WP_020954231.1 DUF3889 domain-containing protein -
  ACGLYC_RS11960 (ACGLYC_11960) - 2469283..2469462 (-) 180 WP_003153093.1 YqzE family protein -
  ACGLYC_RS11965 (ACGLYC_11965) comGG 2469519..2469896 (-) 378 WP_032866434.1 competence type IV pilus minor pilin ComGG Machinery gene
  ACGLYC_RS11970 (ACGLYC_11970) comGF 2469897..2470064 (-) 168 WP_235183824.1 ComGF family competence protein Machinery gene
  ACGLYC_RS11975 (ACGLYC_11975) - 2470061..2470255 (-) 195 WP_225917419.1 hypothetical protein -
  ACGLYC_RS11980 (ACGLYC_11980) comGE 2470299..2470613 (-) 315 WP_007408323.1 competence type IV pilus minor pilin ComGE -
  ACGLYC_RS11985 (ACGLYC_11985) comGD 2470597..2471034 (-) 438 WP_007408322.1 competence type IV pilus minor pilin ComGD Machinery gene
  ACGLYC_RS11990 (ACGLYC_11990) comGC 2471024..2471332 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=1063377 ACGLYC_RS11935 WP_003153104.1 2466195..2466530(+) (sinR) [Bacillus velezensis strain K12]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=1063377 ACGLYC_RS11935 WP_003153104.1 2466195..2466530(+) (sinR) [Bacillus velezensis strain K12]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991

Multiple sequence alignment