Detailed information NTG1062309

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: ACFJ75_RS28325
• Genome accession: NZ_CP171611
• Coordinates: 6137174..6138508 (+)
• Length: 444 a.a.
• NCBI ID: WP_350403728.1
• Uniprot ID: -
• Organism: Pseudomonas protegens strain JP2-4390
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 6132174..6143508

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACFJ75_RS28305	pgeF	6133533..6134258 (-)	726	WP_350403727.1	peptidoglycan editing factor PgeF	-
ACFJ75_RS28310	rluD	6134255..6135217 (-)	963	WP_011063535.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
ACFJ75_RS28315	-	6135368..6136390 (+)	1023	WP_041119934.1	outer membrane protein assembly factor BamD	-
ACFJ75_RS28320	-	6136515..6136748 (+)	234	WP_236186349.1	PP0621 family protein	-
ACFJ75_RS28325	pilR	6137174..6138508 (+)	1335	WP_350403728.1	sigma-54 dependent transcriptional regulator	Regulator
ACFJ75_RS28330	thiO	6138505..6139605 (-)	1101	WP_041119937.1	glycine oxidase ThiO	-
ACFJ75_RS28335	-	6139659..6140060 (-)	402	WP_015637084.1	type IV pilin protein	-
ACFJ75_RS28340	-	6140076..6143138 (-)	3063	WP_350403729.1	PilC/PilY family type IV pilus protein	-

Sequence

Protein

• Length: 444 a.a.
• Molecular weight: 49261.51 Da
• Isoelectric Point: 8.8679

>NTDB_id=1062309 ACFJ75_RS28325 WP_350403728.1 6137174..6138508(+) (pilR) [Pseudomonas protegens strain JP2-4390]
MNPRQSVLVVDDATETRALVEITLGRMRLHTQSARTLQEARGRLARERFDLCLTDLQLPDGSGLELLRHIRQSHPNLPVA
LLSNGACAQASAGALQAGACQLLHKPLDLKQLRAWVGASLKQATDCATEDPARQLLGDSAPMNALRRHIDKLAHSLAAVY
ISGESGSGKERVARLLHQLGPRARYPFVPVNCGAIPSELMESELFGHCKGSFSGAVSDQPGLFLAAHGGTLFLDEVADLP
LAMQVKLLRALQEKSVRPVGSQQEKTVDVRILCATHKDLKNEVETGRFRQDLYYRLNVIELRVPALRERRGDIPALAGHV
LQRLARDSGQPAVQLRPEALQALERYDFPGNVRELENLLERAQTLCEGRWIETDDLQLPRAGSLETRSSAAATQLDLALH
LQQVERQLLLQALEETRWNRTAAARRLSLSFRSMRYRMKKLGLD

Nucleotide

• Length: 1335 bp

>NTDB_id=1062309 ACFJ75_RS28325 WP_350403728.1 6137174..6138508(+) (pilR) [Pseudomonas protegens strain JP2-4390]
ATGAACCCACGGCAATCGGTGCTGGTGGTCGATGACGCCACGGAAACCCGCGCCCTTGTGGAGATCACTCTGGGCCGAAT
GCGCTTGCACACCCAAAGTGCGCGCACCCTGCAGGAAGCCCGTGGCCGCCTGGCCCGGGAGCGCTTTGACCTGTGCCTGA
CCGACCTGCAGCTACCGGACGGCAGCGGGTTGGAGCTGCTGCGGCACATCCGCCAGTCCCACCCCAACCTTCCTGTGGCG
CTGCTAAGCAACGGCGCCTGTGCACAGGCCAGCGCCGGCGCCCTGCAGGCCGGAGCCTGCCAGTTGCTGCACAAGCCCCT
GGACCTCAAGCAACTGCGCGCTTGGGTAGGTGCCAGCCTGAAACAAGCCACGGATTGCGCAACGGAGGACCCAGCCCGGC
AGTTGCTGGGAGACTCGGCGCCCATGAATGCCCTGCGTCGCCACATCGACAAGCTGGCCCACAGCCTGGCGGCGGTCTAT
ATCAGCGGTGAATCCGGCAGTGGCAAGGAACGGGTCGCCCGTCTGCTCCACCAGCTTGGCCCCAGGGCCCGATACCCGTT
CGTCCCGGTCAACTGCGGGGCGATTCCTTCCGAATTGATGGAGAGTGAACTCTTCGGCCATTGCAAAGGCAGCTTCAGTG
GCGCCGTCAGCGATCAGCCCGGGTTATTTCTGGCCGCCCACGGCGGCACCCTGTTTCTTGATGAGGTCGCCGACCTGCCC
CTGGCCATGCAAGTAAAACTGCTGCGAGCCTTGCAGGAAAAATCCGTGCGCCCGGTAGGCAGCCAACAGGAAAAAACCGT
CGACGTGCGGATTCTCTGTGCCACCCACAAGGACCTGAAAAACGAGGTAGAGACCGGACGCTTTCGCCAGGACCTCTACT
ACCGCCTGAACGTCATCGAGCTGCGAGTCCCGGCGTTGCGCGAGCGCCGTGGCGACATCCCCGCACTGGCCGGGCACGTC
CTGCAGCGCCTGGCCAGGGACAGCGGCCAGCCTGCCGTCCAGCTACGTCCCGAAGCCCTGCAAGCCCTGGAGCGCTATGA
CTTTCCGGGCAACGTGCGAGAGCTGGAAAACCTGCTGGAACGGGCGCAGACCCTATGCGAAGGGCGCTGGATAGAAACAG
ACGATTTGCAGTTGCCCAGAGCCGGCAGCCTTGAAACCCGATCATCGGCGGCGGCCACCCAGCTAGACCTGGCGCTGCAC
CTGCAACAGGTGGAGCGCCAGCTGCTGCTCCAGGCCCTGGAGGAAACCCGCTGGAACCGCACGGCAGCGGCCCGGCGGCT
GAGCCTGTCGTTTCGTTCGATGCGTTACCGCATGAAGAAGCTCGGGCTGGACTAG

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (7-114)

• Bacterial regulatory protein, Fis family (HTH_8) (401-441)

• Sigma-54 interaction domain (Sigma54_activat) (136-301)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	63.431	99.775	0.633
pilR	Acinetobacter baumannii strain A118	45.098	100	0.466
luxO	Vibrio cholerae strain A1552	36.952	97.523	0.36