Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   ACGTGP_RS07515 Genome accession   NZ_CP171398
Coordinates   1629139..1629879 (-) Length   246 a.a.
NCBI ID   WP_000076101.1    Uniprot ID   N9LH62
Organism   Acinetobacter baumannii strain T24     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1624139..1634879
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGTGP_RS07495 (ACGTGP_07495) aroB 1624681..1625763 (-) 1083 WP_272343339.1 3-dehydroquinate synthase -
  ACGTGP_RS07500 (ACGTGP_07500) aroK 1625792..1626361 (-) 570 WP_000643712.1 shikimate kinase AroK -
  ACGTGP_RS07505 (ACGTGP_07505) pilQ 1626373..1628538 (-) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  ACGTGP_RS07510 (ACGTGP_07510) pilP 1628601..1629128 (-) 528 WP_000695069.1 pilus assembly protein PilP Machinery gene
  ACGTGP_RS07515 (ACGTGP_07515) pilO 1629139..1629879 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  ACGTGP_RS07520 (ACGTGP_07520) pilN 1629876..1630517 (-) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  ACGTGP_RS07525 (ACGTGP_07525) pilM 1630517..1631575 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  ACGTGP_RS07530 (ACGTGP_07530) ponA 1631737..1634292 (+) 2556 WP_394556498.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27819.59 Da        Isoelectric Point: 4.8357

>NTDB_id=1061140 ACGTGP_RS07515 WP_000076101.1 1629139..1629879(-) (pilO) [Acinetobacter baumannii strain T24]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=1061140 ACGTGP_RS07515 WP_000076101.1 1629139..1629879(-) (pilO) [Acinetobacter baumannii strain T24]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTATGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTACAGCTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTCGAGCAGTTGCCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGTATCGCTGCTTTGCCTCGTATTGTAAC
CATGCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LH62

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

100

100

1
  comO Acinetobacter baylyi ADP1

69.421

98.374

0.683

Multiple sequence alignment