Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   ACGTGP_RS07520 Genome accession   NZ_CP171398
Coordinates   1629876..1630517 (-) Length   213 a.a.
NCBI ID   WP_000201227.1    Uniprot ID   A0A009HSE6
Organism   Acinetobacter baumannii strain T24     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1624876..1635517
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGTGP_RS07500 (ACGTGP_07500) aroK 1625792..1626361 (-) 570 WP_000643712.1 shikimate kinase AroK -
  ACGTGP_RS07505 (ACGTGP_07505) pilQ 1626373..1628538 (-) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  ACGTGP_RS07510 (ACGTGP_07510) pilP 1628601..1629128 (-) 528 WP_000695069.1 pilus assembly protein PilP Machinery gene
  ACGTGP_RS07515 (ACGTGP_07515) pilO 1629139..1629879 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  ACGTGP_RS07520 (ACGTGP_07520) pilN 1629876..1630517 (-) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  ACGTGP_RS07525 (ACGTGP_07525) pilM 1630517..1631575 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  ACGTGP_RS07530 (ACGTGP_07530) ponA 1631737..1634292 (+) 2556 WP_394556498.1 penicillin-binding protein PBP1a -
  ACGTGP_RS07535 (ACGTGP_07535) - 1634310..1635134 (-) 825 WP_023896133.1 putative RNA methyltransferase -
  ACGTGP_RS07540 (ACGTGP_07540) - 1635137..1635469 (-) 333 WP_000169602.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24019.35 Da        Isoelectric Point: 5.3968

>NTDB_id=1061141 ACGTGP_RS07520 WP_000201227.1 1629876..1630517(-) (pilN) [Acinetobacter baumannii strain T24]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPSAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVTTTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=1061141 ACGTGP_RS07520 WP_000201227.1 1629876..1630517(-) (pilN) [Acinetobacter baumannii strain T24]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATTCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCATCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAAAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGACCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009HSE6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

100

100

1
  comN Acinetobacter baylyi ADP1

71.905

98.592

0.709

Multiple sequence alignment