Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   ACGTHP_RS10875 Genome accession   NZ_CP171396
Coordinates   2336323..2336733 (+) Length   136 a.a.
NCBI ID   WP_038347430.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain T14     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2331323..2341733
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGTHP_RS10860 (ACGTHP_10860) - 2332312..2334618 (+) 2307 WP_000259109.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  ACGTHP_RS10865 (ACGTHP_10865) - 2334663..2335436 (-) 774 WP_272264734.1 SDR family oxidoreductase -
  ACGTHP_RS10870 (ACGTHP_10870) mazG 2335548..2336354 (+) 807 WP_000359489.1 nucleoside triphosphate pyrophosphohydrolase -
  ACGTHP_RS10875 (ACGTHP_10875) comEA 2336323..2336733 (+) 411 WP_038347430.1 ComEA family DNA-binding protein Machinery gene
  ACGTHP_RS10880 (ACGTHP_10880) pcnB 2336858..2338321 (+) 1464 WP_001194201.1 polynucleotide adenylyltransferase PcnB -
  ACGTHP_RS10885 (ACGTHP_10885) folK 2338318..2338800 (+) 483 WP_000219215.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  ACGTHP_RS10890 (ACGTHP_10890) panB 2338846..2339655 (+) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  ACGTHP_RS10895 (ACGTHP_10895) panC 2339659..2340507 (+) 849 WP_000846362.1 pantoate--beta-alanine ligase -
  ACGTHP_RS10900 (ACGTHP_10900) rapZ 2340530..2341381 (+) 852 WP_000821671.1 RNase adapter RapZ -
  ACGTHP_RS10905 (ACGTHP_10905) - 2341378..2341647 (+) 270 WP_000567533.1 HPr family phosphocarrier protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15628.85 Da        Isoelectric Point: 10.3828

>NTDB_id=1061107 ACGTHP_RS10875 WP_038347430.1 2336323..2336733(+) (comEA) [Acinetobacter baumannii strain T14]
MQYSMRFWKNKYFVLIILCLGVISPSVYAQSFDQNFQEWKAKQQMYDQKLNITKSSHSNGSKISQTKNFNDSTGQIHLNQ
ANVNEFQQLKGVGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGAAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=1061107 ACGTHP_RS10875 WP_038347430.1 2336323..2336733(+) (comEA) [Acinetobacter baumannii strain T14]
ATGCAATACAGCATGAGATTTTGGAAAAATAAGTATTTTGTTTTAATAATTTTGTGCTTGGGAGTAATTTCACCTTCGGT
TTACGCTCAATCTTTTGATCAAAACTTTCAAGAATGGAAGGCTAAACAGCAGATGTATGACCAAAAGTTAAACATCACTA
AGTCTTCTCATTCTAATGGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTCTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAATTAAAAGGTGTAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGGCAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGAGCAGCTATTTTTGAAAAAAATAAATCGCGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

97.059

100

0.971
  comEA Acinetobacter baumannii D1279779

94.853

100

0.949
  comEA Acinetobacter baylyi ADP1

41.985

96.324

0.404

Multiple sequence alignment