Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   ACGIGR_RS10770 Genome accession   NZ_CP171394
Coordinates   2265256..2265912 (-) Length   218 a.a.
NCBI ID   WP_394545236.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain T3     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2260256..2270912
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGIGR_RS10750 (ACGIGR_10750) proC 2260635..2261471 (+) 837 WP_085916948.1 pyrroline-5-carboxylate reductase -
  ACGIGR_RS10755 (ACGIGR_10755) - 2261493..2262062 (+) 570 WP_000501183.1 YggT family protein -
  ACGIGR_RS10760 (ACGIGR_10760) polA 2262122..2264893 (-) 2772 WP_001134660.1 DNA polymerase I -
  ACGIGR_RS10765 (ACGIGR_10765) - 2265048..2265263 (+) 216 Protein_2107 hypothetical protein -
  ACGIGR_RS10770 (ACGIGR_10770) crp 2265256..2265912 (-) 657 WP_394545236.1 cAMP-activated global transcriptional regulator CRP Regulator
  ACGIGR_RS10775 (ACGIGR_10775) - 2266153..2266272 (+) 120 Protein_2109 hypothetical protein -
  ACGIGR_RS10780 (ACGIGR_10780) - 2266351..2266773 (+) 423 WP_001195082.1 OsmC family protein -
  ACGIGR_RS10785 (ACGIGR_10785) - 2266865..2267290 (+) 426 WP_001026230.1 GNAT family N-acetyltransferase -
  ACGIGR_RS10790 (ACGIGR_10790) - 2267287..2268093 (-) 807 WP_001237344.1 peptidoglycan DD-metalloendopeptidase family protein -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 24628.30 Da        Isoelectric Point: 7.1112

>NTDB_id=1061060 ACGIGR_RS10770 WP_394545236.1 2265256..2265912(-) (crp) [Acinetobacter baumannii strain T3]
MTSNFSQLSTDALSPGQLPESVKALLKRAHINRYPKRTTIVDAGTESKSLYLILKGSVSIILREDDEREIVVAYLNPGDF
FGEMGLFEPNPQRTAEVRTRDVCEIAEISYDNFHELSKQYPDLSYAVFAQLVRRLKNTTRKMTDLAFIDVSGRIARCLID
LSSQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEDQGMIQTDGKAILIYE

Nucleotide


Download         Length: 657 bp        

>NTDB_id=1061060 ACGIGR_RS10770 WP_394545236.1 2265256..2265912(-) (crp) [Acinetobacter baumannii strain T3]
ATGACTTCAAATTTTTCACAACTCAGCACAGATGCTTTATCTCCGGGGCAACTACCTGAATCCGTTAAAGCATTGTTAAA
ACGTGCTCACATCAACAGATATCCAAAACGAACCACAATTGTTGATGCCGGAACAGAGTCAAAATCTTTATATTTAATTT
TAAAAGGCTCAGTTTCAATTATTTTACGTGAAGACGATGAACGTGAAATTGTTGTGGCATATTTGAATCCTGGTGACTTC
TTTGGGGAAATGGGGCTTTTCGAACCGAACCCTCAACGTACAGCTGAAGTTCGTACCCGTGATGTCTGTGAAATTGCGGA
AATTTCATATGACAACTTCCACGAACTGAGCAAACAGTATCCAGATCTCAGCTATGCCGTTTTCGCGCAACTCGTTCGTC
GTTTAAAAAATACAACTCGTAAAATGACCGATCTTGCATTTATTGATGTGTCAGGCCGTATTGCGCGTTGCTTAATCGAC
CTATCTTCACAACCAGAAGCAATGATCTTGCCGAATGGCCGTCAAATTCGTATTACTCGACAAGAGATTGGACGCATTGT
CGGGTGTTCACGAGAAATGGTTGGCCGTGTATTAAAGACCTTAGAAGATCAAGGTATGATTCAAACTGACGGTAAAGCTA
TTCTAATTTATGAATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, crp family (Crp)

(176-207)

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

99.083

100

0.991
  crp Vibrio cholerae strain A1552

47.805

94.037

0.45
  crp Haemophilus influenzae Rd KW20

49.223

88.532

0.436

Multiple sequence alignment