Detailed information NTG1060537

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: ACF6ZU_RS08505
• Genome accession: NZ_CP171224
• Coordinates: 1833949..1835280 (+)
• Length: 443 a.a.
• NCBI ID: WP_392891522.1
• Uniprot ID: -
• Organism: Pseudomonas migulae strain HY-2
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 1828949..1840280

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACF6ZU_RS08480 (ACF6ZU_08480)	pgeF	1829150..1829875 (-)	726	WP_392891514.1	peptidoglycan editing factor PgeF	-
ACF6ZU_RS08485 (ACF6ZU_08485)	rluD	1829872..1830834 (-)	963	WP_008028788.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
ACF6ZU_RS08490 (ACF6ZU_08490)	-	1830986..1832008 (+)	1023	WP_392891517.1	outer membrane protein assembly factor BamD	-
ACF6ZU_RS08495 (ACF6ZU_08495)	-	1832134..1832367 (+)	234	WP_392891518.1	PP0621 family protein	-
ACF6ZU_RS08500 (ACF6ZU_08500)	pilS	1832357..1833946 (+)	1590	WP_392891520.1	ATP-binding protein	Regulator
ACF6ZU_RS08505 (ACF6ZU_08505)	pilR	1833949..1835280 (+)	1332	WP_392891522.1	sigma-54-dependent transcriptional regulator	Regulator
ACF6ZU_RS08510 (ACF6ZU_08510)	thiO	1835400..1836500 (-)	1101	WP_392891524.1	glycine oxidase ThiO	-
ACF6ZU_RS08515 (ACF6ZU_08515)	-	1836558..1836959 (-)	402	WP_392891526.1	type IV pilin protein	-
ACF6ZU_RS08520 (ACF6ZU_08520)	-	1836974..1840087 (-)	3114	WP_392891528.1	pilus assembly protein	-

Sequence

Protein

• Length: 443 a.a.
• Molecular weight: 49693.95 Da
• Isoelectric Point: 6.5955

>NTDB_id=1060537 ACF6ZU_RS08505 WP_392891522.1 1833949..1835280(+) (pilR) [Pseudomonas migulae strain HY-2]
MSQRQKVLIVDDEPDIRELLEITLGRMKLDTFSARNLDEAQSLLKRETFNLCLTDMRLPDGTGLELVQHIQQRYPQLPVA
MITAYGSLETAINALKAGAFDFLTKPVDLTRLRELVTSALRMPAPGVTIDRRLLGDSLPMRSLRKQIDKLARSQAPVYIS
GESGSGKELVARLIHEQGSRAHQPFVPVNCGAIPSELMESEFFGHRRGSFSGAIEDKPGLFQAAHGGTLFLDEVADLPLA
MQVKLLRAIQEKAVRSVGGQQETVVDVRILCATHKDLDAEVAAERFRQDLYYRLNVIELRVPPLRERRDDIESLASHVLK
RLAAGSGEPATKLHPQALEALKGYRFPGNVRELENMLERAHTLCENQQIEAGDLRLAEGNCTADTGVPDLTQIDNLEDYL
DNVERKLILQALEETRWNRTAAAQRLNLSFRSMRYRLKKFGLD

Nucleotide

• Length: 1332 bp

>NTDB_id=1060537 ACF6ZU_RS08505 WP_392891522.1 1833949..1835280(+) (pilR) [Pseudomonas migulae strain HY-2]
ATGAGCCAACGGCAAAAAGTCCTGATCGTCGACGACGAACCCGACATCCGCGAACTTCTGGAAATCACCCTGGGACGGAT
GAAACTCGACACCTTCAGCGCTCGCAACCTTGACGAAGCCCAATCCCTGTTGAAACGCGAAACGTTCAACCTGTGCCTGA
CAGACATGCGCCTGCCGGACGGCACCGGCCTGGAACTGGTGCAACACATTCAACAGCGCTACCCCCAACTCCCGGTAGCC
ATGATCACCGCCTACGGCAGCCTCGAAACCGCAATCAATGCCCTCAAGGCTGGCGCCTTCGACTTCCTGACCAAACCGGT
GGACCTGACACGCTTGCGCGAGCTGGTCACCAGCGCCCTGCGCATGCCGGCGCCAGGTGTCACCATCGATCGCCGCCTGC
TGGGTGACTCGTTACCCATGCGCAGCCTGCGCAAGCAAATCGACAAACTGGCGCGCAGTCAGGCGCCGGTGTACATCAGC
GGCGAATCCGGTAGTGGCAAGGAACTGGTCGCGCGGTTGATCCATGAACAAGGATCACGCGCACATCAGCCTTTTGTCCC
GGTGAACTGCGGGGCGATCCCGTCGGAGCTGATGGAAAGTGAGTTTTTCGGCCATCGCCGGGGCAGCTTCAGCGGCGCCA
TCGAAGACAAGCCCGGGCTGTTCCAGGCCGCTCATGGCGGCACGTTGTTCCTTGACGAAGTGGCGGACCTGCCACTGGCG
ATGCAAGTCAAACTGTTGCGGGCGATTCAGGAAAAAGCCGTTCGCAGCGTCGGTGGACAACAGGAAACCGTGGTCGATGT
CCGCATTCTCTGCGCCACCCATAAAGACCTCGACGCCGAAGTGGCCGCCGAACGCTTTCGCCAGGATTTGTACTACCGGC
TGAATGTCATCGAACTGCGGGTTCCGCCCTTGCGCGAACGCCGCGATGACATCGAATCACTGGCCAGTCATGTGCTCAAG
CGCCTGGCAGCAGGCAGCGGCGAGCCCGCCACCAAACTTCACCCGCAGGCCCTTGAAGCACTGAAAGGCTACCGCTTTCC
GGGCAACGTGCGGGAACTGGAGAACATGCTAGAGCGGGCACATACCTTGTGCGAAAACCAACAGATCGAAGCCGGCGACC
TGCGCCTGGCCGAGGGCAACTGCACGGCAGACACCGGCGTACCGGACCTGACGCAGATCGACAACCTGGAGGACTATCTG
GATAACGTCGAACGCAAGCTCATCCTCCAGGCGCTGGAGGAAACCCGCTGGAACCGCACGGCGGCGGCTCAGCGGTTGAA
TCTGTCGTTTCGGTCGATGCGTTACAGGCTGAAGAAATTCGGGTTGGATTGA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (400-440)

• Sigma-54 interaction domain (Sigma54_activat) (134-299)

• Response regulator receiver domain (Response_reg) (7-116)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	78.33	100	0.783
pilR	Acinetobacter baumannii strain A118	48.491	100	0.508