Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ACF3N8_RS02380 Genome accession   NZ_CP171119
Coordinates   504826..505335 (+) Length   169 a.a.
NCBI ID   WP_009383307.1    Uniprot ID   K9AQ81
Organism   Staphylococcus massiliensis strain WGS1515     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 499826..510335
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF3N8_RS02345 (ACF3N8_02345) - 500482..501261 (+) 780 WP_392450414.1 ParB/RepB/Spo0J family partition protein -
  ACF3N8_RS02350 (ACF3N8_02350) - 501268..502158 (+) 891 WP_392450415.1 mechanosensitive ion channel family protein -
  ACF3N8_RS02355 (ACF3N8_02355) - 502176..502388 (+) 213 WP_009383300.1 DUF951 domain-containing protein -
  ACF3N8_RS02360 (ACF3N8_02360) ychF 502388..503485 (+) 1098 WP_009383302.1 redox-regulated ATPase YchF -
  ACF3N8_RS02365 (ACF3N8_02365) - 503552..503878 (+) 327 WP_009383304.1 hypothetical protein -
  ACF3N8_RS02370 (ACF3N8_02370) - 504002..504328 (+) 327 WP_009383305.1 hypothetical protein -
  ACF3N8_RS02375 (ACF3N8_02375) rpsF 504506..504805 (+) 300 WP_009383306.1 30S ribosomal protein S6 -
  ACF3N8_RS02380 (ACF3N8_02380) ssbA 504826..505335 (+) 510 WP_009383307.1 single-stranded DNA-binding protein Machinery gene
  ACF3N8_RS02385 (ACF3N8_02385) rpsR 505381..505623 (+) 243 WP_009383308.1 30S ribosomal protein S18 -
  ACF3N8_RS02390 (ACF3N8_02390) - 505754..506872 (+) 1119 WP_392450179.1 Fic family protein -
  ACF3N8_RS02395 (ACF3N8_02395) - 507219..507893 (-) 675 WP_392450160.1 IS6 family transposase -
  ACF3N8_RS02400 (ACF3N8_02400) - 508428..508712 (+) 285 WP_081502238.1 cytochrome c biogenesis protein CcdA -
  ACF3N8_RS02405 (ACF3N8_02405) lspA 508815..509291 (-) 477 WP_162129658.1 signal peptidase II -
  ACF3N8_RS02410 (ACF3N8_02410) - 509446..509847 (+) 402 WP_002454665.1 metalloregulator ArsR/SmtB family transcription factor -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18714.39 Da        Isoelectric Point: 5.2369

>NTDB_id=1060219 ACF3N8_RS02380 WP_009383307.1 504826..505335(+) (ssbA) [Staphylococcus massiliensis strain WGS1515]
MINRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQAENVNNYLSKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKSAQSGRQSNNQGNNYQNYGQQNFGGQQQGQNTSSYQDSSKPKSDNPFANANGPI
DISDDDLPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=1060219 ACF3N8_RS02380 WP_009383307.1 504826..505335(+) (ssbA) [Staphylococcus massiliensis strain WGS1515]
ATGATTAACCGAGTTGTATTAGTAGGTCGTTTAACTAAGGATCCAGAATACAGAACGACTCCCTCAGGCGTAAGTGTAGC
GACATTCACTTTAGCAGTAAATCGTACGTTTACGAATGCGCAAGGGGAACGTGAAGCGGACTTCATTAACTGTGTTGTTT
TTAGAAAACAAGCAGAGAATGTAAATAATTATTTATCTAAAGGAAGTCTTGCTGGCGTTGATGGTCGCATACAGTCACGC
AGTTACGAAAACCAAGAAGGCCGTCGTATTTTTGTTACAGAAGTTGTCTGTGATAGCGTTCAATTCCTTGAACCTAAATC
AGCTCAAAGTGGTCGTCAGTCTAATAATCAAGGTAATAACTACCAAAATTATGGACAACAAAACTTTGGCGGACAACAAC
AAGGTCAAAATACTTCGTCTTACCAAGATTCATCAAAACCTAAGTCAGATAATCCATTCGCAAACGCTAATGGACCGATT
GATATTAGTGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K9AQ81

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

60.795

100

0.633
  ssb Latilactobacillus sakei subsp. sakei 23K

56.069

100

0.574
  ssbB Bacillus subtilis subsp. subtilis str. 168

61.321

62.722

0.385

Multiple sequence alignment