Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ACF3NL_RS06300 | Genome accession | NZ_CP171118 |
| Coordinates | 1381052..1381567 (+) | Length | 171 a.a. |
| NCBI ID | WP_004635363.1 | Uniprot ID | H3NDL1 |
| Organism | Dolosigranulum pigrum strain WGS1517 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1376052..1386567
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACF3NL_RS06280 (ACF3NL_06280) | - | 1376651..1377388 (+) | 738 | WP_004635367.1 | TraX family protein | - |
| ACF3NL_RS06285 (ACF3NL_06285) | purB | 1377483..1378778 (-) | 1296 | WP_208954267.1 | adenylosuccinate lyase | - |
| ACF3NL_RS06290 (ACF3NL_06290) | nox | 1379040..1380377 (-) | 1338 | WP_111949544.1 | H2O-forming NADH oxidase | - |
| ACF3NL_RS06295 (ACF3NL_06295) | rpsF | 1380698..1380997 (+) | 300 | WP_004635364.1 | 30S ribosomal protein S6 | - |
| ACF3NL_RS06300 (ACF3NL_06300) | ssb | 1381052..1381567 (+) | 516 | WP_004635363.1 | single-stranded DNA-binding protein | Machinery gene |
| ACF3NL_RS06305 (ACF3NL_06305) | rpsR | 1381594..1381833 (+) | 240 | WP_111949546.1 | 30S ribosomal protein S18 | - |
| ACF3NL_RS06310 (ACF3NL_06310) | - | 1381983..1383974 (+) | 1992 | WP_208965611.1 | DHH family phosphoesterase | - |
| ACF3NL_RS06315 (ACF3NL_06315) | rplI | 1383990..1384442 (+) | 453 | WP_077863030.1 | 50S ribosomal protein L9 | - |
| ACF3NL_RS06320 (ACF3NL_06320) | dnaB | 1384602..1386017 (+) | 1416 | WP_040376800.1 | replicative DNA helicase | - |
Sequence
Protein
Download Length: 171 a.a. Molecular weight: 19276.66 Da Isoelectric Point: 4.3857
>NTDB_id=1060204 ACF3NL_RS06300 WP_004635363.1 1381052..1381567(+) (ssb) [Dolosigranulum pigrum strain WGS1517]
MINNVTLVGRLTRDPELRYTGNGTAVVSFTIAADRPFTNSQGEREADFINCVAWRRTAEVVSNYTNKGSLVGVTGRIQTR
SYENNEGRTVYVTEVVVENFRMLESKATAENRRSNDDYSNGGFNNNQSFNQSRNNQSQNQNSFSSNNKFDNDPFDTSNND
DIDISDDDLPF
MINNVTLVGRLTRDPELRYTGNGTAVVSFTIAADRPFTNSQGEREADFINCVAWRRTAEVVSNYTNKGSLVGVTGRIQTR
SYENNEGRTVYVTEVVVENFRMLESKATAENRRSNDDYSNGGFNNNQSFNQSRNNQSQNQNSFSSNNKFDNDPFDTSNND
DIDISDDDLPF
Nucleotide
Download Length: 516 bp
>NTDB_id=1060204 ACF3NL_RS06300 WP_004635363.1 1381052..1381567(+) (ssb) [Dolosigranulum pigrum strain WGS1517]
TTGATTAATAATGTTACGCTAGTAGGTAGATTAACGCGAGATCCTGAGTTGAGATATACTGGGAACGGAACAGCCGTCGT
ATCTTTTACAATTGCAGCTGATCGTCCGTTTACGAATAGTCAAGGTGAACGCGAAGCTGATTTTATTAATTGTGTGGCGT
GGAGAAGAACAGCGGAAGTTGTTTCGAATTACACAAACAAGGGTTCATTAGTTGGTGTAACTGGTCGTATTCAAACACGC
AGTTATGAAAATAATGAAGGTCGAACAGTTTATGTGACAGAAGTTGTGGTTGAGAACTTTAGAATGTTAGAATCAAAAGC
AACTGCTGAAAACCGTCGATCAAATGATGATTACAGTAATGGCGGTTTTAATAACAATCAATCATTTAATCAGTCCCGAA
ATAATCAATCTCAGAATCAGAATAGTTTCAGTTCGAATAATAAGTTTGACAATGATCCATTCGATACAAGTAATAACGAT
GATATTGATATATCAGATGATGATTTACCATTTTGA
TTGATTAATAATGTTACGCTAGTAGGTAGATTAACGCGAGATCCTGAGTTGAGATATACTGGGAACGGAACAGCCGTCGT
ATCTTTTACAATTGCAGCTGATCGTCCGTTTACGAATAGTCAAGGTGAACGCGAAGCTGATTTTATTAATTGTGTGGCGT
GGAGAAGAACAGCGGAAGTTGTTTCGAATTACACAAACAAGGGTTCATTAGTTGGTGTAACTGGTCGTATTCAAACACGC
AGTTATGAAAATAATGAAGGTCGAACAGTTTATGTGACAGAAGTTGTGGTTGAGAACTTTAGAATGTTAGAATCAAAAGC
AACTGCTGAAAACCGTCGATCAAATGATGATTACAGTAATGGCGGTTTTAATAACAATCAATCATTTAATCAGTCCCGAA
ATAATCAATCTCAGAATCAGAATAGTTTCAGTTCGAATAATAAGTTTGACAATGATCCATTCGATACAAGTAATAACGAT
GATATTGATATATCAGATGATGATTTACCATTTTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
56.069 |
100 |
0.567 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
52.247 |
100 |
0.544 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
61.988 |
0.368 |