Detailed information NTG1060109

Bioinformatically predicted

Overview

• Name: comL
• Type: Machinery gene
• Locus tag: ACF3NW_RS05030
• Genome accession: NZ_CP171110
• Coordinates: 961372..962181 (+)
• Length: 269 a.a.
• NCBI ID: WP_064090723.1
• Uniprot ID: A0A1B6VT27
• Organism: Eikenella halliae strain WGS1533
• Function: DNA processing; DNA transport into the cytoplasm (predicted from homology) DNA processing DNA binding and uptake

Genomic Context

Location: 956372..967181

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACF3NW_RS05000 (ACF3NW_05000)	-	956599..957240 (+)	642	WP_314251496.1	DUF533 domain-containing protein	-
ACF3NW_RS05005 (ACF3NW_05005)	-	957317..957904 (-)	588	WP_314251495.1	ZapG family protein	-
ACF3NW_RS05010 (ACF3NW_05010)	-	958002..958484 (-)	483	WP_314251494.1	DUF4279 domain-containing protein	-
ACF3NW_RS05015 (ACF3NW_05015)	-	958495..958998 (-)	504	WP_314251493.1	phosphatidylglycerophosphatase A	-
ACF3NW_RS05020 (ACF3NW_05020)	thiL	958991..959977 (-)	987	WP_314251492.1	thiamine-phosphate kinase	-
ACF3NW_RS05025 (ACF3NW_05025)	rluD	960255..961373 (-)	1119	WP_314251490.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
ACF3NW_RS05030 (ACF3NW_05030)	comL	961372..962181 (+)	810	WP_064090723.1	outer membrane protein assembly factor BamD	Machinery gene
ACF3NW_RS05035 (ACF3NW_05035)	-	962267..962701 (+)	435	WP_314251487.1	DUF4124 domain-containing protein	-
ACF3NW_RS05040 (ACF3NW_05040)	-	962849..963691 (+)	843	WP_314251485.1	J domain-containing protein	-
ACF3NW_RS05045 (ACF3NW_05045)	-	963694..964470 (+)	777	WP_314251483.1	ferredoxin--NADP reductase	-
ACF3NW_RS05050 (ACF3NW_05050)	-	964589..965455 (-)	867	WP_314251481.1	ATP-binding protein	-
ACF3NW_RS05055 (ACF3NW_05055)	-	965612..966265 (+)	654	WP_314251479.1	GAF domain-containing protein	-
ACF3NW_RS05060 (ACF3NW_05060)	ribA	966317..966907 (+)	591	WP_314251477.1	GTP cyclohydrolase II	-

Sequence

Protein

• Length: 269 a.a.
• Molecular weight: 31340.43 Da
• Isoelectric Point: 9.1458

>NTDB_id=1060109 ACF3NW_RS05030 WP_064090723.1 961372..962181(+) (comL) [Eikenella halliae strain WGS1533]
MKKILLVTGLAVMLSACSSTSTTAVSQDAQVTQDWSVDKLYAEAHEEMESRNYSRSVRLYEILRARFPNTRQAVQSRLDT
AYVYYKDEQQPQALAHVEQFLKLYPNHPNTDYALYLKGLIVLNQDKSIFNKLASQDWSDRDPKANREAYQVFNELITRFP
DSKYANDAREKMTRLVDALGGNEMAIARYYMQRGAYLAAANRAQGIVSRYQNTRYVEEALAIMMTAYARLEKPELSSDTR
RVLAQNFPQSPYLQKEWQPNDIPWWRYWK

Nucleotide

• Length: 810 bp

>NTDB_id=1060109 ACF3NW_RS05030 WP_064090723.1 961372..962181(+) (comL) [Eikenella halliae strain WGS1533]
ATGAAAAAGATTCTTTTAGTTACCGGCCTGGCAGTGATGCTGTCGGCCTGCTCCAGCACTTCAACCACCGCTGTGAGCCA
AGATGCCCAGGTTACGCAGGATTGGTCGGTAGATAAGCTGTATGCCGAAGCGCACGAGGAAATGGAGAGCCGCAATTATA
GCCGTTCGGTGCGTTTATATGAAATTCTGCGGGCGCGTTTCCCCAACACCCGCCAAGCGGTGCAATCGCGGCTGGATACG
GCTTATGTGTATTATAAAGACGAGCAGCAGCCGCAGGCGCTGGCGCATGTGGAGCAGTTTTTGAAGCTGTATCCCAACCA
TCCGAACACCGATTATGCGCTGTATCTGAAGGGCTTGATTGTGCTCAATCAAGATAAATCCATCTTCAATAAGCTGGCTT
CGCAGGATTGGTCCGACCGCGACCCGAAAGCAAACCGCGAAGCCTATCAGGTGTTTAACGAGCTCATCACCCGCTTCCCC
GATAGCAAATACGCCAACGACGCACGCGAGAAAATGACGCGCCTGGTGGATGCGCTGGGCGGCAACGAAATGGCCATCGC
CCGCTACTATATGCAGCGCGGCGCCTACTTGGCTGCTGCCAACCGCGCGCAGGGGATTGTGAGCCGTTATCAGAACACGC
GCTATGTGGAAGAAGCGCTGGCGATTATGATGACCGCCTACGCCCGTTTGGAAAAACCGGAGTTGAGCAGCGATACCCGC
CGCGTGTTGGCGCAAAACTTCCCGCAAAGCCCTTATCTGCAGAAAGAATGGCAGCCAAACGATATTCCGTGGTGGCGCTA
TTGGAAGTAG

Domains

Predicted by InterproScan.

• Outer membrane lipoprotein (YfiO) (36-238)

• Prokaryotic membrane lipoprotein lipid attachment site (LPAM_1) (1-18)

3D structure

• AlphaFold DB: A0A1B6VT27

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comL	Neisseria gonorrhoeae MS11	65.299	99.628	0.651
comL	Neisseria meningitidis MC58	64.925	99.628	0.647