Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   DK42_RS09655 Genome accession   NZ_CP007571
Coordinates   1945060..1945650 (+) Length   196 a.a.
NCBI ID   WP_000272490.1    Uniprot ID   Q3JYM8
Organism   Streptococcus agalactiae strain GBS2-NM     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1940060..1950650
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DK42_RS09640 (DK42_09785) - 1941392..1941595 (-) 204 WP_000191849.1 cold shock domain-containing protein -
  DK42_RS09645 (DK42_09790) hexB 1941821..1943794 (+) 1974 WP_000034616.1 DNA mismatch repair endonuclease MutL Machinery gene
  DK42_RS09650 (DK42_09795) - 1943826..1945058 (+) 1233 WP_000657480.1 MFS transporter -
  DK42_RS09655 (DK42_09800) ruvA 1945060..1945650 (+) 591 WP_000272490.1 Holliday junction branch migration protein RuvA Machinery gene
  DK42_RS09660 (DK42_09805) - 1945673..1946224 (+) 552 WP_000817342.1 DNA-3-methyladenine glycosylase I -
  DK42_RS09665 (DK42_09810) cinA 1946313..1947572 (+) 1260 WP_001200981.1 competence/damage-inducible protein A Machinery gene
  DK42_RS09670 (DK42_09815) recA 1947646..1948785 (+) 1140 WP_001085741.1 recombinase RecA Machinery gene
  DK42_RS09675 (DK42_09820) spx 1949001..1949399 (+) 399 WP_000591161.1 transcriptional regulator Spx -
  DK42_RS09680 (DK42_09825) - 1949601..1949867 (+) 267 WP_000507056.1 IreB family regulatory phosphoprotein -
  DK42_RS09685 (DK42_09830) ruvX 1949867..1950286 (+) 420 WP_001222109.1 Holliday junction resolvase RuvX -
  DK42_RS09690 (DK42_09835) - 1950312..1950629 (+) 318 WP_000940932.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21696.94 Da        Isoelectric Point: 5.7488

>NTDB_id=105964 DK42_RS09655 WP_000272490.1 1945060..1945650(+) (ruvA) [Streptococcus agalactiae strain GBS2-NM]
MYDYIKGKLSKITAKFIVVETAGLGYVIYVANPYSFSGYVNQEVTIYLHQVIRDDAHLLFGFHTENEKEIFLNLISVSGI
GPTTALAIIAVDDNEGLVSAIDNSDIKYLTKFPKIGKKTAQQMILDLSGKFVEASGESATSRKVSSEQNSNLEEAMEALL
ALGYKATELKKVKAFFEGTNETVEQYIKSSLKMLMK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=105964 DK42_RS09655 WP_000272490.1 1945060..1945650(+) (ruvA) [Streptococcus agalactiae strain GBS2-NM]
ATGTACGATTATATTAAAGGAAAATTGAGTAAAATAACAGCTAAATTTATTGTTGTGGAAACAGCTGGATTGGGATACGT
GATATATGTGGCAAATCCCTACTCTTTTTCAGGTTACGTTAATCAAGAAGTTACCATCTACTTACATCAAGTCATTCGCG
ATGATGCACATCTTTTATTTGGTTTTCATACGGAAAATGAAAAAGAAATTTTTCTTAATTTAATTTCAGTATCAGGAATT
GGTCCAACGACCGCTTTAGCAATTATTGCAGTCGATGACAATGAAGGTCTCGTAAGTGCCATTGATAATAGTGATATTAA
GTATTTGACTAAATTTCCAAAGATAGGAAAAAAAACAGCACAACAGATGATCCTTGATTTGTCAGGGAAGTTTGTAGAAG
CTTCTGGTGAGAGTGCGACTAGTCGTAAGGTTAGCTCTGAGCAGAATAGCAATCTTGAAGAAGCTATGGAAGCTTTGTTA
GCGTTGGGGTATAAGGCGACTGAATTGAAAAAAGTAAAAGCCTTTTTTGAAGGTACGAACGAGACTGTGGAGCAATACAT
CAAATCTAGTTTGAAGATGTTGATGAAATAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(151-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3JYM8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

67.513

100

0.679
  ruvA Streptococcus pneumoniae D39

67.513

100

0.679
  ruvA Streptococcus pneumoniae TIGR4

67.005

100

0.673
  ruvA Bacillus subtilis subsp. subtilis str. 168

39.409

100

0.408

Multiple sequence alignment