Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccpA   Type   Regulator
Locus tag   ACFKHK_RS03400 Genome accession   NZ_CP170760
Coordinates   630314..631315 (+) Length   333 a.a.
NCBI ID   WP_239604832.1    Uniprot ID   -
Organism   Streptococcus parasuis strain FZ2     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 625314..636315
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFKHK_RS03385 - 626534..627391 (-) 858 WP_174845885.1 DUF975 family protein -
  ACFKHK_RS03390 tgt 627659..628801 (+) 1143 WP_130554360.1 tRNA guanosine(34) transglycosylase Tgt -
  ACFKHK_RS03395 - 629023..630108 (-) 1086 WP_392462531.1 M24 family metallopeptidase -
  ACFKHK_RS03400 ccpA 630314..631315 (+) 1002 WP_239604832.1 catabolite control protein A Regulator
  ACFKHK_RS03405 - 631432..632475 (+) 1044 WP_171988521.1 glycosyltransferase family 4 protein -
  ACFKHK_RS03410 - 632496..633809 (+) 1314 WP_171988522.1 glycosyltransferase family 4 protein -
  ACFKHK_RS03415 - 633824..634198 (+) 375 WP_171988523.1 hypothetical protein -
  ACFKHK_RS03420 - 634468..634833 (+) 366 Protein_635 MazG-like protein -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 36834.86 Da        Isoelectric Point: 5.5299

>NTDB_id=1059257 ACFKHK_RS03400 WP_239604832.1 630314..631315(+) (ccpA) [Streptococcus parasuis strain FZ2]
MNTDDTVTIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIDRLDYRPNAVARGLASKKTTTVGVVIPNIANAYFA
TLAKGIDDIADMYKYNIVLANSDENDEKEINVINTLFSKQVDGIIFMGYHLTDKIRAEFSRSRTPIVLAGTVDLEHQLPS
VNIDYATASSDAVKLLAKNNKKIAFVSGPLVDDINGKVRFSGYKEGLQANGLEFNEGLVFESKYKYEEGYVLAERVLNAG
ATAAYIAEDEIAAGLLNGISDRGIKVPEEFEIITSDDSQVTKYTRPNLTSINQPIYDIGAIAMRMLTKIMHKEELDNREV
ILNHGIKERKSTK

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=1059257 ACFKHK_RS03400 WP_239604832.1 630314..631315(+) (ccpA) [Streptococcus parasuis strain FZ2]
ATGAATACAGACGATACCGTGACGATTTATGACGTTGCGCGTGAAGCTGGTGTGTCAATGGCTACAGTCAGTCGTGTAGT
CAATGGTAATAAAAATGTCAAGGAAAACACTCGTAAAAAAGTGTTAGAGGTGATTGATCGATTAGATTATCGCCCAAATG
CTGTTGCGCGTGGTTTGGCAAGTAAAAAAACGACAACTGTGGGGGTTGTGATTCCAAATATTGCCAATGCCTATTTTGCA
ACCTTGGCTAAGGGGATTGATGACATTGCTGATATGTATAAGTATAATATCGTATTGGCAAACAGTGATGAAAATGACGA
GAAAGAAATTAATGTTATTAATACATTGTTTTCTAAGCAAGTCGATGGTATTATCTTCATGGGCTATCATCTGACAGATA
AGATTCGTGCAGAATTTTCACGTTCACGCACTCCGATTGTATTAGCAGGTACTGTCGATTTGGAACACCAATTGCCAAGT
GTCAATATTGACTACGCAACTGCAAGTAGTGATGCAGTAAAATTGCTTGCTAAAAATAACAAAAAAATCGCCTTTGTTTC
AGGTCCATTGGTTGATGACATCAATGGGAAAGTTCGTTTTTCTGGTTACAAAGAAGGACTCCAAGCGAATGGTTTAGAGT
TTAATGAAGGTCTTGTCTTTGAATCAAAATACAAATATGAAGAAGGCTATGTCTTGGCGGAACGTGTCTTGAATGCGGGA
GCAACTGCAGCATATATTGCTGAAGATGAAATCGCTGCCGGTTTGTTAAATGGTATCAGTGATCGTGGTATAAAGGTTCC
TGAAGAATTTGAAATCATTACAAGTGATGATTCACAGGTAACAAAATATACTCGTCCAAATCTGACGTCCATCAATCAAC
CGATTTACGATATCGGCGCAATTGCCATGCGTATGTTGACAAAAATTATGCACAAGGAAGAATTGGATAATCGCGAAGTT
ATCTTGAATCATGGTATCAAGGAACGTAAATCTACAAAATAA

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(175-332)

Bacterial regulatory proteins, lacI family (LacI)

(8-53)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus gordonii str. Challis substr. CH1

79.279

100

0.793
  ccpA Streptococcus pneumoniae D39

78.378

100

0.784
  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

57.704

99.399

0.574

Multiple sequence alignment