Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACFKHK_RS02385 Genome accession   NZ_CP170760
Coordinates   427660..428154 (+) Length   164 a.a.
NCBI ID   WP_171989336.1    Uniprot ID   -
Organism   Streptococcus parasuis strain FZ2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 422660..433154
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFKHK_RS02360 trpA 423701..424507 (+) 807 WP_392462486.1 tryptophan synthase subunit alpha -
  ACFKHK_RS02365 - 424914..425762 (+) 849 WP_392462487.1 HAD family hydrolase -
  ACFKHK_RS02370 - 425826..426143 (+) 318 Protein_425 family 1 glycosylhydrolase -
  ACFKHK_RS02375 - 426227..427216 (+) 990 WP_171989334.1 lipoate--protein ligase -
  ACFKHK_RS02380 rpsF 427358..427648 (+) 291 WP_171989335.1 30S ribosomal protein S6 -
  ACFKHK_RS02385 ssb 427660..428154 (+) 495 WP_171989336.1 single-stranded DNA-binding protein Machinery gene
  ACFKHK_RS02390 rpsR 428187..428426 (+) 240 WP_002939250.1 30S ribosomal protein S18 -
  ACFKHK_RS02395 - 428902..429558 (-) 657 WP_392462488.1 DUF1129 domain-containing protein -
  ACFKHK_RS02400 - 429574..430518 (-) 945 WP_174846323.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18129.89 Da        Isoelectric Point: 4.7294

>NTDB_id=1059253 ACFKHK_RS02385 WP_171989336.1 427660..428154(+) (ssb) [Streptococcus parasuis strain FZ2]
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQNGEREADFINVVIWRQQAENLANWAKKGALIGVTGRIQTR
SYDNQQGQRVYVTEVVAESFQLLESRTAREGQGGGYSAGNSFAGGNDYNSPYQAPAQSTPNFAREESPFGANNPMDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=1059253 ACFKHK_RS02385 WP_171989336.1 427660..428154(+) (ssb) [Streptococcus parasuis strain FZ2]
ATGATTAATAATGTAGTATTGGTTGGTCGCATGACCCGTGATGCAGAACTTCGTTATACTCCGTCTAACCAGGCTGTTGC
GACTTTTACCTTGGCGGTTAACCGCAATTTTAAAAATCAAAATGGTGAACGGGAAGCGGACTTTATTAACGTAGTCATTT
GGCGCCAACAAGCTGAAAATTTGGCGAATTGGGCTAAAAAAGGTGCGCTGATTGGTGTTACAGGTCGTATTCAGACTCGT
AGCTATGATAACCAACAGGGACAACGTGTCTACGTTACAGAGGTAGTTGCAGAAAGTTTCCAACTTTTGGAAAGCCGTAC
TGCCCGTGAAGGCCAAGGGGGCGGTTATTCAGCTGGTAATTCCTTTGCTGGTGGCAATGATTATAACTCGCCTTATCAAG
CGCCTGCGCAATCTACACCGAACTTCGCTCGAGAAGAAAGTCCATTTGGAGCAAACAATCCAATGGATATATCAGACGAT
GACCTACCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

56.897

100

0.604
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.558

100

0.604
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.046

66.463

0.366

Multiple sequence alignment