Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   ACFKHJ_RS08680 Genome accession   NZ_CP170759
Coordinates   1672230..1673156 (-) Length   308 a.a.
NCBI ID   WP_171989130.1    Uniprot ID   -
Organism   Streptococcus parasuis strain FZ1     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1667230..1678156
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFKHJ_RS08665 thrC 1668526..1670010 (-) 1485 WP_392452499.1 threonine synthase -
  ACFKHJ_RS08670 amiF 1670223..1671146 (-) 924 WP_277940498.1 ATP-binding cassette domain-containing protein Regulator
  ACFKHJ_RS08675 amiE 1671156..1672220 (-) 1065 WP_174845630.1 ABC transporter ATP-binding protein Regulator
  ACFKHJ_RS08680 amiD 1672230..1673156 (-) 927 WP_171989130.1 oligopeptide ABC transporter permease OppC Regulator
  ACFKHJ_RS08685 amiC 1673156..1674655 (-) 1500 WP_392452501.1 ABC transporter permease Regulator
  ACFKHJ_RS08690 amiA 1674732..1676699 (-) 1968 WP_392452502.1 peptide ABC transporter substrate-binding protein Regulator
  ACFKHJ_RS08695 pbp3 1676915..1678156 (+) 1242 WP_392452504.1 D-alanyl-D-alanine carboxypeptidase PBP3 -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34617.53 Da        Isoelectric Point: 9.4261

>NTDB_id=1059221 ACFKHJ_RS08680 WP_171989130.1 1672230..1673156(-) (amiD) [Streptococcus parasuis strain FZ1]
MSTIDKSKFQFVKRDDFASEVIDTPAYSYWNSVFRQFLKKKSTIVMLIILVAIVLMSFIYPIFANYDFNDVSKINDFSAR
YNWPNAEYWFGTDANGQSLFDGVWYGARNSILIALIATVINLVVGVILGGIWGVSKTFDKIMMEIYNVISNIPSLMIFIV
MSYALGAGFWNLILAFCLTGWIGVAFSIRIQIMRYRDLEYNLASRTLGTPTFKLVVKNLLPQLVSVIVTQASQSLPSYIS
VEAFLSYFGIGLPVTTPSLGRLLSKYAQNVTTNAYLFWIPLAALILVSLSLFIVGQNLSDASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=1059221 ACFKHJ_RS08680 WP_171989130.1 1672230..1673156(-) (amiD) [Streptococcus parasuis strain FZ1]
ATGTCAACAATTGATAAAAGTAAATTTCAATTTGTAAAACGTGATGATTTTGCTTCGGAGGTAATTGATACTCCTGCCTA
CTCATATTGGAATTCTGTATTTCGACAGTTTCTAAAGAAAAAATCAACCATTGTAATGTTAATTATTTTGGTAGCCATCG
TCCTTATGAGTTTTATTTATCCCATTTTTGCAAATTATGATTTCAATGATGTAAGTAAAATTAATGATTTCAGCGCTCGT
TATAATTGGCCAAATGCCGAGTATTGGTTCGGAACTGATGCAAATGGACAGTCTCTATTTGATGGGGTTTGGTATGGAGC
AAGAAATTCAATTTTGATTGCACTTATTGCGACTGTTATTAACCTTGTCGTTGGTGTCATCCTTGGGGGAATCTGGGGTG
TATCAAAGACTTTTGATAAAATAATGATGGAAATTTACAATGTCATATCAAATATTCCATCACTAATGATTTTCATTGTA
ATGTCATATGCTCTTGGAGCTGGCTTCTGGAATTTGATATTAGCATTTTGTTTAACAGGATGGATTGGTGTAGCGTTTTC
AATCCGAATCCAGATTATGAGATATCGCGATTTGGAATATAATTTGGCTAGTCGCACGCTCGGTACTCCAACTTTTAAAT
TAGTAGTAAAAAACCTATTGCCACAATTGGTATCTGTGATAGTAACACAAGCCTCACAAAGTTTACCAAGCTATATTTCA
GTGGAGGCCTTCCTTTCATACTTTGGAATAGGGCTCCCTGTGACAACACCAAGTTTAGGTCGATTGCTTTCTAAATATGC
TCAAAATGTGACTACCAATGCATACTTGTTTTGGATTCCTTTAGCAGCGTTAATCTTAGTTTCGCTATCACTCTTCATTG
TTGGACAAAATTTGTCTGATGCAAGTGACCCACGTACACATAGATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

77.922

100

0.779
  amiD Streptococcus thermophilus LMG 18311

76.299

100

0.763
  amiD Streptococcus thermophilus LMD-9

76.299

100

0.763

Multiple sequence alignment