Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   ACFKHJ_RS08675 Genome accession   NZ_CP170759
Coordinates   1671156..1672220 (-) Length   354 a.a.
NCBI ID   WP_174845630.1    Uniprot ID   -
Organism   Streptococcus parasuis strain FZ1     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1666156..1677220
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFKHJ_RS08660 - 1667154..1668422 (-) 1269 WP_392452497.1 MATE family efflux transporter -
  ACFKHJ_RS08665 thrC 1668526..1670010 (-) 1485 WP_392452499.1 threonine synthase -
  ACFKHJ_RS08670 amiF 1670223..1671146 (-) 924 WP_277940498.1 ATP-binding cassette domain-containing protein Regulator
  ACFKHJ_RS08675 amiE 1671156..1672220 (-) 1065 WP_174845630.1 ABC transporter ATP-binding protein Regulator
  ACFKHJ_RS08680 amiD 1672230..1673156 (-) 927 WP_171989130.1 oligopeptide ABC transporter permease OppC Regulator
  ACFKHJ_RS08685 amiC 1673156..1674655 (-) 1500 WP_392452501.1 ABC transporter permease Regulator
  ACFKHJ_RS08690 amiA 1674732..1676699 (-) 1968 WP_392452502.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 39515.44 Da        Isoelectric Point: 4.8983

>NTDB_id=1059220 ACFKHJ_RS08675 WP_174845630.1 1671156..1672220(-) (amiE) [Streptococcus parasuis strain FZ1]
MAEKNNVILSAKDVVVEFEVRDRVLTAIRNVSIDLIEGEVLAIVGESGSGKSVLTKTFTGMLEENGRIASGSIIYRGEEL
TDIKKHEEWEKIRGAKIATIFQDPMTSLNPLVTIGRQITEVIIKHQGKSISEAKELAVNYMERVGIPDAKKRFNEYPFQY
SGGMRQRIVIAIALACRPDVLICDEPTTALDVTIQAQILDLLKELQKEYNFTTIFITHDLGVVARIADKVAVMYAGEVIE
FGTVEDIFYDPRHPYTWSLLSSLPQLADSNGELFSIPGTPPSLFTPVLGDAFAPRSEFAMQVDFEESPPIFQVTENHWAK
TWLLHPEAPKAAKPEVIQDLHSKIKSKMSVEDIK

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=1059220 ACFKHJ_RS08675 WP_174845630.1 1671156..1672220(-) (amiE) [Streptococcus parasuis strain FZ1]
ATGGCAGAAAAGAACAATGTAATATTATCCGCAAAAGATGTGGTCGTGGAATTTGAAGTTCGTGACCGTGTTTTGACAGC
TATACGTAATGTCTCTATAGATTTAATCGAGGGAGAGGTTCTCGCAATTGTAGGGGAGTCTGGTTCTGGAAAGTCAGTTT
TGACAAAAACTTTCACAGGGATGCTGGAAGAGAATGGACGAATTGCTTCAGGAAGTATTATTTATCGTGGAGAAGAATTA
ACTGATATAAAAAAACATGAAGAATGGGAAAAAATACGTGGTGCAAAAATTGCAACTATTTTCCAGGATCCAATGACAAG
TCTTAATCCTTTGGTTACAATTGGCCGCCAAATTACCGAAGTTATCATTAAACATCAAGGAAAATCAATTTCTGAGGCAA
AAGAACTTGCGGTTAATTATATGGAACGAGTGGGTATTCCAGATGCAAAAAAACGTTTCAATGAATACCCGTTTCAATAT
TCAGGTGGTATGCGACAAAGAATTGTTATTGCAATTGCCTTAGCATGCCGTCCAGATGTATTAATTTGTGATGAACCAAC
AACAGCATTAGATGTAACAATACAAGCTCAAATTTTAGACTTATTAAAAGAATTACAAAAAGAATACAATTTTACAACAA
TTTTCATCACGCATGATTTGGGTGTTGTTGCAAGAATCGCTGACAAAGTTGCTGTTATGTATGCTGGCGAAGTTATTGAA
TTTGGAACCGTAGAAGACATCTTTTATGACCCTCGACATCCATATACATGGAGTCTGCTTTCAAGTCTTCCTCAGTTAGC
CGATTCTAATGGAGAACTCTTTTCAATTCCAGGAACACCTCCTTCACTTTTCACTCCGGTCTTAGGAGATGCATTTGCAC
CTCGTTCTGAATTCGCGATGCAGGTTGATTTTGAAGAATCTCCACCTATTTTTCAAGTTACAGAAAATCATTGGGCTAAA
ACTTGGTTATTACACCCTGAAGCTCCAAAAGCGGCCAAACCAGAAGTGATTCAGGATTTACATTCAAAAATTAAATCTAA
GATGTCAGTAGAAGATATTAAATAG

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(29-187)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

78.51

98.588

0.774
  amiE Streptococcus thermophilus LMG 18311

78.223

98.588

0.771
  amiE Streptococcus thermophilus LMD-9

78.223

98.588

0.771
  oppD Streptococcus mutans UA159

56.047

95.763

0.537

Multiple sequence alignment