Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   ACFKHJ_RS08670 Genome accession   NZ_CP170759
Coordinates   1670223..1671146 (-) Length   307 a.a.
NCBI ID   WP_277940498.1    Uniprot ID   -
Organism   Streptococcus parasuis strain FZ1     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1665223..1676146
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFKHJ_RS08655 mvk 1665740..1666675 (-) 936 WP_392452495.1 mevalonate kinase -
  ACFKHJ_RS08660 - 1667154..1668422 (-) 1269 WP_392452497.1 MATE family efflux transporter -
  ACFKHJ_RS08665 thrC 1668526..1670010 (-) 1485 WP_392452499.1 threonine synthase -
  ACFKHJ_RS08670 amiF 1670223..1671146 (-) 924 WP_277940498.1 ATP-binding cassette domain-containing protein Regulator
  ACFKHJ_RS08675 amiE 1671156..1672220 (-) 1065 WP_174845630.1 ABC transporter ATP-binding protein Regulator
  ACFKHJ_RS08680 amiD 1672230..1673156 (-) 927 WP_171989130.1 oligopeptide ABC transporter permease OppC Regulator
  ACFKHJ_RS08685 amiC 1673156..1674655 (-) 1500 WP_392452501.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 307 a.a.        Molecular weight: 34636.81 Da        Isoelectric Point: 6.4233

>NTDB_id=1059219 ACFKHJ_RS08670 WP_277940498.1 1670223..1671146(-) (amiF) [Streptococcus parasuis strain FZ1]
MTEKLVEIKDLEISFGEGRKKFVAVKNANFFINRGETFSLVGESGSGKTTIGRAIIGLNETSGGDILYNGEKINGKISHE
KSRELIKKIQMIFQDPAASLNERATVDYIISEGLYNFKLFNNEEERQAKVRSMMTEVGLLAEHLTRFPHEFSGGQRQRIG
IARALVMNPELVIADEPISALDVSVRAQVLNLLKRLQEELGLTYLFIAHDLSVVRFISDRIAVIHKGVIVEVAETEELFK
NPLHPYTRSLLSAVPIPDPILERQKTLVVYDPNMHDYSIDKPEMHEIKPGHFVWSNKAEFAKYSEGI

Nucleotide


Download         Length: 924 bp        

>NTDB_id=1059219 ACFKHJ_RS08670 WP_277940498.1 1670223..1671146(-) (amiF) [Streptococcus parasuis strain FZ1]
ATGACTGAAAAATTAGTTGAAATCAAAGATTTAGAAATTTCTTTCGGTGAAGGGCGCAAAAAATTTGTAGCTGTCAAAAA
TGCTAATTTCTTTATTAATCGTGGAGAAACATTCTCCTTAGTTGGAGAATCGGGGTCTGGTAAGACAACGATTGGTCGTG
CGATAATTGGACTAAATGAAACAAGTGGTGGAGATATTCTTTACAATGGAGAGAAAATAAATGGGAAAATTTCTCATGAG
AAGTCTCGAGAATTAATTAAGAAAATTCAAATGATTTTTCAAGATCCAGCTGCGAGTTTGAATGAACGTGCAACAGTAGA
CTATATTATCTCTGAGGGCTTGTACAATTTTAAATTGTTTAATAATGAAGAAGAGCGGCAAGCAAAAGTTCGGTCAATGA
TGACAGAAGTGGGGCTACTTGCGGAACACTTAACACGCTTTCCTCATGAGTTCTCAGGAGGCCAACGCCAGAGGATAGGT
ATAGCTCGAGCACTTGTGATGAATCCTGAATTGGTGATTGCCGATGAACCGATTTCTGCATTAGATGTGTCTGTTAGAGC
TCAAGTCTTAAATTTATTGAAGAGATTGCAAGAAGAGCTGGGCTTAACTTATCTCTTTATTGCACATGATTTGTCAGTTG
TTCGGTTTATTTCTGATAGGATTGCAGTGATTCATAAAGGTGTTATTGTAGAAGTGGCAGAGACAGAGGAATTGTTTAAG
AATCCTTTGCATCCATACACTCGTTCCTTACTATCTGCTGTTCCTATTCCGGATCCAATTTTAGAAAGACAAAAAACTTT
AGTAGTATATGACCCAAATATGCATGATTATTCTATAGATAAGCCAGAAATGCATGAAATCAAGCCAGGCCATTTTGTAT
GGTCAAATAAAGCAGAATTTGCAAAATATTCAGAAGGCATATAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)

ABC transporter (ABC_tran)

(25-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

80.198

98.697

0.792
  amiF Streptococcus thermophilus LMD-9

79.868

98.697

0.788
  amiF Streptococcus salivarius strain HSISS4

79.538

98.697

0.785

Multiple sequence alignment