Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccpA   Type   Regulator
Locus tag   ACFKHJ_RS03330 Genome accession   NZ_CP170759
Coordinates   633264..634265 (+) Length   333 a.a.
NCBI ID   WP_172036444.1    Uniprot ID   -
Organism   Streptococcus parasuis strain FZ1     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 628264..639265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFKHJ_RS03315 - 629484..630341 (-) 858 WP_392452940.1 DUF975 family protein -
  ACFKHJ_RS03320 tgt 630609..631751 (+) 1143 WP_130554360.1 tRNA guanosine(34) transglycosylase Tgt -
  ACFKHJ_RS03325 - 631973..633058 (-) 1086 WP_174845886.1 Xaa-Pro peptidase family protein -
  ACFKHJ_RS03330 ccpA 633264..634265 (+) 1002 WP_172036444.1 catabolite control protein A Regulator
  ACFKHJ_RS03335 - 634382..635425 (+) 1044 WP_174845887.1 glycosyltransferase family 4 protein -
  ACFKHJ_RS03340 - 635446..636759 (+) 1314 WP_392452943.1 glycosyltransferase family 4 protein -
  ACFKHJ_RS03345 - 636774..637148 (+) 375 WP_216807042.1 hypothetical protein -
  ACFKHJ_RS03350 - 637418..637783 (+) 366 Protein_621 MazG-like protein -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 36790.81 Da        Isoelectric Point: 5.5299

>NTDB_id=1059202 ACFKHJ_RS03330 WP_172036444.1 633264..634265(+) (ccpA) [Streptococcus parasuis strain FZ1]
MNTDDTVTIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIDRLDYRPNAVARGLASKKTTTVGVVIPNIANAYFA
TLAKGIDDIADMYKYNIVLANSDENDEKEINVVNTLFSKQVDGIIFMGYHLTDKIRAEFSRSRTPIVLAGTVDLEHQLPS
VNIDYAAASSDAVKLLAKNNKKIAFVSGPLVDDINGKVRFSGYKEGLQANGLEFNEGLVFESKYKYEEGYVLAERVLNAG
ATAAYIAEDEIAAGLLNGISDRGIKVPEEFEIITSDDSQVTKYTRPNLTSINQPIYDIGAIAMRMLTKIMHKEELDNREV
ILNHGIKERKSTK

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=1059202 ACFKHJ_RS03330 WP_172036444.1 633264..634265(+) (ccpA) [Streptococcus parasuis strain FZ1]
ATGAATACAGACGATACCGTGACGATTTATGACGTTGCGCGTGAAGCTGGTGTGTCAATGGCTACAGTCAGTCGTGTAGT
CAATGGTAATAAAAATGTCAAGGAAAACACTCGTAAAAAAGTGTTAGAGGTGATTGATCGATTAGATTATCGCCCAAATG
CTGTTGCGCGTGGTTTGGCAAGTAAAAAAACTACAACTGTGGGGGTTGTGATTCCAAATATTGCCAATGCCTATTTTGCA
ACCTTGGCTAAGGGGATTGATGACATTGCTGATATGTATAAGTATAATATCGTATTGGCAAACAGTGATGAAAATGACGA
GAAAGAAATTAATGTTGTTAATACATTGTTTTCTAAGCAAGTCGATGGTATTATCTTCATGGGCTATCATCTGACAGATA
AGATTCGTGCAGAATTTTCGCGTTCACGCACTCCGATTGTATTAGCAGGTACTGTCGATTTGGAACACCAATTGCCAAGT
GTCAATATTGACTACGCAGCTGCAAGTAGTGATGCAGTAAAATTGCTTGCTAAAAATAACAAAAAAATCGCCTTTGTTTC
AGGTCCATTGGTTGATGACATCAATGGGAAAGTTCGTTTTTCTGGTTACAAAGAAGGACTCCAAGCGAATGGTTTAGAGT
TTAATGAAGGTCTTGTCTTTGAATCAAAATACAAATATGAAGAAGGCTATGTCTTGGCGGAACGTGTCTTGAATGCGGGA
GCAACTGCAGCATATATTGCTGAAGATGAAATCGCTGCCGGTTTGTTAAATGGTATCAGTGATCGTGGTATAAAGGTTCC
TGAAGAATTTGAAATCATTACAAGTGATGATTCACAGGTAACAAAATATACTCGTCCAAATCTGACGTCCATCAATCAAC
CGATTTACGATATCGGCGCAATTGCCATGCGTATGTTGACAAAAATTATGCACAAGGAAGAATTGGATAATCGCGAAGTT
ATCTTGAATCATGGTATCAAGGAACGTAAATCTACAAAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(8-53)

Periplasmic binding protein-like domain (Peripla_BP_3)

(175-332)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus gordonii str. Challis substr. CH1

79.58

100

0.796
  ccpA Streptococcus pneumoniae D39

78.679

100

0.787
  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

58.006

99.399

0.577

Multiple sequence alignment