Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   ACFW98_RS10885 Genome accession   NZ_CP170719
Coordinates   2279051..2279740 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus amyloliquefaciens strain JP5008     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2274051..2284740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFW98_RS10850 (ACFW98_10850) - 2274249..2274731 (-) 483 WP_003151394.1 flagellar protein FlgN -
  ACFW98_RS10855 (ACFW98_10855) flgM 2274746..2275012 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACFW98_RS10860 (ACFW98_10860) - 2275082..2275501 (-) 420 WP_025285352.1 TIGR03826 family flagellar region protein -
  ACFW98_RS10865 (ACFW98_10865) comFC 2275575..2276264 (-) 690 WP_257008591.1 phosphoribosyltransferase family protein Machinery gene
  ACFW98_RS10870 (ACFW98_10870) - 2276270..2276554 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  ACFW98_RS10875 (ACFW98_10875) comFA 2276612..2277997 (-) 1386 WP_395096363.1 DEAD/DEAH box helicase Machinery gene
  ACFW98_RS10880 (ACFW98_10880) - 2278105..2278953 (-) 849 WP_053574012.1 DegV family protein -
  ACFW98_RS10885 (ACFW98_10885) degU 2279051..2279740 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ACFW98_RS10890 (ACFW98_10890) degS 2279817..2280980 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  ACFW98_RS10895 (ACFW98_10895) - 2281203..2281850 (+) 648 WP_003151384.1 YigZ family protein -
  ACFW98_RS10900 (ACFW98_10900) - 2281855..2283108 (+) 1254 WP_324636351.1 LCP family protein -
  ACFW98_RS10905 (ACFW98_10905) - 2283207..2284283 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=1058740 ACFW98_RS10885 WP_003219701.1 2279051..2279740(-) (degU) [Bacillus amyloliquefaciens strain JP5008]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1058740 ACFW98_RS10885 WP_003219701.1 2279051..2279740(-) (degU) [Bacillus amyloliquefaciens strain JP5008]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment