Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   ACFW98_RS10865 Genome accession   NZ_CP170719
Coordinates   2275575..2276264 (-) Length   229 a.a.
NCBI ID   WP_257008591.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain JP5008     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2270575..2281264
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFW98_RS10830 (ACFW98_10830) fliW 2270666..2271097 (-) 432 WP_007407475.1 flagellar assembly protein FliW -
  ACFW98_RS10835 (ACFW98_10835) - 2271127..2271696 (-) 570 WP_007407476.1 DUF6470 family protein -
  ACFW98_RS10840 (ACFW98_10840) flgL 2271787..2272704 (-) 918 WP_007407477.1 flagellar hook-associated protein FlgL -
  ACFW98_RS10845 (ACFW98_10845) flgK 2272716..2274233 (-) 1518 WP_025285351.1 flagellar hook-associated protein FlgK -
  ACFW98_RS10850 (ACFW98_10850) - 2274249..2274731 (-) 483 WP_003151394.1 flagellar protein FlgN -
  ACFW98_RS10855 (ACFW98_10855) flgM 2274746..2275012 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACFW98_RS10860 (ACFW98_10860) - 2275082..2275501 (-) 420 WP_025285352.1 TIGR03826 family flagellar region protein -
  ACFW98_RS10865 (ACFW98_10865) comFC 2275575..2276264 (-) 690 WP_257008591.1 phosphoribosyltransferase family protein Machinery gene
  ACFW98_RS10870 (ACFW98_10870) - 2276270..2276554 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  ACFW98_RS10875 (ACFW98_10875) comFA 2276612..2277997 (-) 1386 WP_395096363.1 DEAD/DEAH box helicase Machinery gene
  ACFW98_RS10880 (ACFW98_10880) - 2278105..2278953 (-) 849 WP_053574012.1 DegV family protein -
  ACFW98_RS10885 (ACFW98_10885) degU 2279051..2279740 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ACFW98_RS10890 (ACFW98_10890) degS 2279817..2280980 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25261.89 Da        Isoelectric Point: 8.0779

>NTDB_id=1058738 ACFW98_RS10865 WP_257008591.1 2275575..2276264(-) (comFC) [Bacillus amyloliquefaciens strain JP5008]
MNCLLCESPISSSLTWRSLFSLAPEQEMCSICSSQFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVISPLIRL
NNEKQSKKSKTDRLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1058738 ACFW98_RS10865 WP_257008591.1 2275575..2276264(-) (comFC) [Bacillus amyloliquefaciens strain JP5008]
CTGAATTGTTTATTGTGTGAATCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GATGTGCAGCATATGCAGCAGCCAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGTTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGTTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCTGTCATTTCCCCCCTCATCCGACTG
AACAACGAAAAACAATCCAAAAAGAGCAAAACAGACAGGCTGTCTGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATTTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGCAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-61)

Phosphoribosyl transferase domain (Pribosyltran)

(167-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

59.471

99.127

0.59

Multiple sequence alignment