Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   ACFW98_RS10875 Genome accession   NZ_CP170719
Coordinates   2276612..2277997 (-) Length   461 a.a.
NCBI ID   WP_395096363.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain JP5008     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2271612..2282997
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFW98_RS10840 (ACFW98_10840) flgL 2271787..2272704 (-) 918 WP_007407477.1 flagellar hook-associated protein FlgL -
  ACFW98_RS10845 (ACFW98_10845) flgK 2272716..2274233 (-) 1518 WP_025285351.1 flagellar hook-associated protein FlgK -
  ACFW98_RS10850 (ACFW98_10850) - 2274249..2274731 (-) 483 WP_003151394.1 flagellar protein FlgN -
  ACFW98_RS10855 (ACFW98_10855) flgM 2274746..2275012 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACFW98_RS10860 (ACFW98_10860) - 2275082..2275501 (-) 420 WP_025285352.1 TIGR03826 family flagellar region protein -
  ACFW98_RS10865 (ACFW98_10865) comFC 2275575..2276264 (-) 690 WP_257008591.1 phosphoribosyltransferase family protein Machinery gene
  ACFW98_RS10870 (ACFW98_10870) - 2276270..2276554 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  ACFW98_RS10875 (ACFW98_10875) comFA 2276612..2277997 (-) 1386 WP_395096363.1 DEAD/DEAH box helicase Machinery gene
  ACFW98_RS10880 (ACFW98_10880) - 2278105..2278953 (-) 849 WP_053574012.1 DegV family protein -
  ACFW98_RS10885 (ACFW98_10885) degU 2279051..2279740 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ACFW98_RS10890 (ACFW98_10890) degS 2279817..2280980 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  ACFW98_RS10895 (ACFW98_10895) - 2281203..2281850 (+) 648 WP_003151384.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52598.04 Da        Isoelectric Point: 10.1374

>NTDB_id=1058739 ACFW98_RS10875 WP_395096363.1 2276612..2277997(-) (comFA) [Bacillus amyloliquefaciens strain JP5008]
MSEGASEFSEVRDFFYGRHLLRSEIPFSDQRIKRFIEKEYITAEPSIIRRKNRYVCQRCGQSDQACFAAFWASSAKRQIT
YCRACVMMGRADELTSLYSWNQAHENSWEPVKLSWEGTLTDGQKQAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVEVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKKAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQSQLPVFLFVPSVHVLKKTTDYFQKLNIRAEGVHAEDTFRKDKVKRFRDGLLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGMTNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=1058739 ACFW98_RS10875 WP_395096363.1 2276612..2277997(-) (comFA) [Bacillus amyloliquefaciens strain JP5008]
ATGTCCGAGGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGATCAGCGCATCAAGCGTTTTATAGAAAAAGAGTATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCTGCTTTGCGGCATTTTGGGCGTCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAGCCCATGAAAACAG
CTGGGAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCAGGCGGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCGGGTATCGAGTTT
GCGCTGAATCACGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGAAGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGTCTGACTCCGTTAATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGATTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAAGGCCGAAGCCGGTTTGCTGAAAAGCGTCCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACCGATTGGGTC
CGCCAAAAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACATACGGGCAGAAGGCGTTCATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAGACG
GCCTGCTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATGACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(328-421)

Type III restriction enzyme, res subunit (ResIII)

(118-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

63.043

99.783

0.629

Multiple sequence alignment