Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ACFDBC_RS11620 Genome accession   NZ_CP170659
Coordinates   2413557..2414066 (-) Length   169 a.a.
NCBI ID   WP_002447681.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain CCARM 3A600     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2408557..2419066
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFDBC_RS11590 (ACFDBC_11590) - 2410956..2411564 (-) 609 WP_021298891.1 stage II sporulation protein M -
  ACFDBC_RS11595 (ACFDBC_11595) - 2411917..2412120 (-) 204 WP_002490231.1 hypothetical protein -
  ACFDBC_RS11600 (ACFDBC_11600) - 2412215..2412403 (-) 189 WP_134294379.1 hypothetical protein -
  ACFDBC_RS11605 (ACFDBC_11605) - 2412536..2412802 (-) 267 Protein_2246 terminase small subunit -
  ACFDBC_RS11610 (ACFDBC_11610) - 2412810..2413045 (+) 236 Protein_2247 Abi family protein -
  ACFDBC_RS11615 (ACFDBC_11615) rpsR 2413270..2413512 (-) 243 WP_001831354.1 30S ribosomal protein S18 -
  ACFDBC_RS11620 (ACFDBC_11620) ssbA 2413557..2414066 (-) 510 WP_002447681.1 single-stranded DNA-binding protein Machinery gene
  ACFDBC_RS11625 (ACFDBC_11625) rpsF 2414089..2414385 (-) 297 WP_001831345.1 30S ribosomal protein S6 -
  ACFDBC_RS11630 (ACFDBC_11630) - 2414770..2415579 (+) 810 WP_058702974.1 GH25 family lysozyme -
  ACFDBC_RS11635 (ACFDBC_11635) - 2415653..2415844 (+) 192 WP_001831355.1 hypothetical protein -
  ACFDBC_RS11640 (ACFDBC_11640) ychF 2416077..2417174 (-) 1098 WP_001831336.1 redox-regulated ATPase YchF -
  ACFDBC_RS11645 (ACFDBC_11645) - 2417186..2417389 (-) 204 WP_001831361.1 DUF951 domain-containing protein -
  ACFDBC_RS11650 (ACFDBC_11650) - 2417410..2418285 (-) 876 WP_002468622.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18671.19 Da        Isoelectric Point: 4.7078

>NTDB_id=1058559 ACFDBC_RS11620 WP_002447681.1 2413557..2414066(-) (ssbA) [Staphylococcus epidermidis strain CCARM 3A600]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQAENVNNYLSKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNAQQGGQRSQNNNFQDYGQGFGGQQSGQNTSYNNNNSSNSNQSDNPFANANGPI
DISDDDLPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=1058559 ACFDBC_RS11620 WP_002447681.1 2413557..2414066(-) (ssbA) [Staphylococcus epidermidis strain CCARM 3A600]
ATGTTAAATCGAGTTGTATTAGTAGGTCGTCTAACGAAAGATCCAGAATACAGAACCACACCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCTGACTTTATTAACTGTGTAGTCT
TCCGTAGACAAGCAGAAAATGTAAATAACTACTTGTCTAAAGGTAGTTTAGCTGGCGTTGATGGTCGCATACAATCACGT
AGTTATGAAAATCAAGAAGGTCGTCGTATTTTTGTTACTGAAGTCGTATGTGATAGTGTTCAATTCCTTGAACCTAAAAA
CGCACAACAAGGTGGCCAACGTTCACAGAACAATAATTTCCAAGACTACGGTCAAGGATTTGGTGGTCAGCAATCAGGAC
AAAATACATCTTACAACAACAATAATTCATCAAACTCAAATCAGTCGGATAATCCGTTTGCAAATGCTAATGGACCGATT
GATATCAGTGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.607

100

0.68
  ssb Latilactobacillus sakei subsp. sakei 23K

55.747

100

0.574
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.143

66.272

0.379

Multiple sequence alignment