Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   ACFXAD_RS05755 Genome accession   NZ_CP170653
Coordinates   1140152..1140796 (+) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus amyloliquefaciens strain JP5011     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1135152..1145796
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFXAD_RS05735 (ACFXAD_05735) - 1135554..1135895 (-) 342 WP_007408677.1 hypothetical protein -
  ACFXAD_RS05740 (ACFXAD_05740) degQ 1136358..1136498 (+) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  ACFXAD_RS05745 (ACFXAD_05745) comQ 1136629..1137615 (+) 987 WP_269195024.1 class 1 isoprenoid biosynthesis enzyme Regulator
  ACFXAD_RS05750 (ACFXAD_05750) comP 1137768..1140071 (+) 2304 WP_040238945.1 histidine kinase Regulator
  ACFXAD_RS05755 (ACFXAD_05755) comA 1140152..1140796 (+) 645 WP_003152052.1 response regulator transcription factor Regulator
  ACFXAD_RS05760 (ACFXAD_05760) - 1140818..1141201 (+) 384 WP_053574130.1 hotdog fold thioesterase -
  ACFXAD_RS05765 (ACFXAD_05765) mnhG 1141241..1141615 (-) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  ACFXAD_RS05770 (ACFXAD_05770) - 1141599..1141883 (-) 285 WP_012118311.1 Na(+)/H(+) antiporter subunit F1 -
  ACFXAD_RS05775 (ACFXAD_05775) - 1141883..1142359 (-) 477 WP_007613428.1 Na+/H+ antiporter subunit E -
  ACFXAD_RS05780 (ACFXAD_05780) - 1142365..1143846 (-) 1482 WP_053574131.1 Na+/H+ antiporter subunit D -
  ACFXAD_RS05785 (ACFXAD_05785) - 1143839..1144180 (-) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  ACFXAD_RS05790 (ACFXAD_05790) - 1144180..1144611 (-) 432 WP_007408670.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=1058476 ACFXAD_RS05755 WP_003152052.1 1140152..1140796(+) (comA) [Bacillus amyloliquefaciens strain JP5011]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=1058476 ACFXAD_RS05755 WP_003152052.1 1140152..1140796(+) (comA) [Bacillus amyloliquefaciens strain JP5011]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGACGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAACAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGACAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864

Multiple sequence alignment