Detailed information    

insolico Bioinformatically predicted

Overview


Name   comQ   Type   Regulator
Locus tag   ACFXAD_RS05745 Genome accession   NZ_CP170653
Coordinates   1136629..1137615 (+) Length   328 a.a.
NCBI ID   WP_269195024.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain JP5011     
Function   modification of ComX; production of ComX (predicted from homology)   
Competence regulation

Genomic Context


Location: 1131629..1142615
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFXAD_RS05715 (ACFXAD_05715) - 1131664..1132062 (+) 399 WP_003152031.1 YueI family protein -
  ACFXAD_RS05720 (ACFXAD_05720) - 1132159..1132710 (+) 552 WP_003152033.1 cysteine hydrolase family protein -
  ACFXAD_RS05725 (ACFXAD_05725) - 1132728..1134194 (+) 1467 WP_015418109.1 nicotinate phosphoribosyltransferase -
  ACFXAD_RS05730 (ACFXAD_05730) - 1134324..1135547 (+) 1224 WP_007408678.1 EAL and HDOD domain-containing protein -
  ACFXAD_RS05735 (ACFXAD_05735) - 1135554..1135895 (-) 342 WP_007408677.1 hypothetical protein -
  ACFXAD_RS05740 (ACFXAD_05740) degQ 1136358..1136498 (+) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  ACFXAD_RS05745 (ACFXAD_05745) comQ 1136629..1137615 (+) 987 WP_269195024.1 class 1 isoprenoid biosynthesis enzyme Regulator
  ACFXAD_RS05750 (ACFXAD_05750) comP 1137768..1140071 (+) 2304 WP_040238945.1 histidine kinase Regulator
  ACFXAD_RS05755 (ACFXAD_05755) comA 1140152..1140796 (+) 645 WP_003152052.1 response regulator transcription factor Regulator
  ACFXAD_RS05760 (ACFXAD_05760) - 1140818..1141201 (+) 384 WP_053574130.1 hotdog fold thioesterase -
  ACFXAD_RS05765 (ACFXAD_05765) mnhG 1141241..1141615 (-) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  ACFXAD_RS05770 (ACFXAD_05770) - 1141599..1141883 (-) 285 WP_012118311.1 Na(+)/H(+) antiporter subunit F1 -
  ACFXAD_RS05775 (ACFXAD_05775) - 1141883..1142359 (-) 477 WP_007613428.1 Na+/H+ antiporter subunit E -

Sequence


Protein


Download         Length: 328 a.a.        Molecular weight: 37726.29 Da        Isoelectric Point: 5.4671

>NTDB_id=1058474 ACFXAD_RS05745 WP_269195024.1 1136629..1137615(+) (comQ) [Bacillus amyloliquefaciens strain JP5011]
MKTIIEQICLDANQIKNRMKSIIERNIFNEHLMQLLLSFIEPKKNFSLAESAVLHYVIFDGENQETAVNLGAAIEILTLT
SDIIDDLEDEDNRDAPWMKIDRSLALSAAFSLYTAGLQSINSISTNPLVIKYVLKYIQDAMQGQHDDLINKPKTEDECLE
VIKLKCGSLFALANVTGTLLATGEFNKSVESYSYYKGIFEQISGDYHAIFKDNTSDILKDKHTLINLYLKRLFNKSSQEL
LCIFSDQKLYSQLRLNKKEFIQKLYDSGASQYVSVLYQLYMHKCETEVENLNLDIKKIKIIKKHLLNNKNNKKDDEDAEF
NKLFFELS

Nucleotide


Download         Length: 987 bp        

>NTDB_id=1058474 ACFXAD_RS05745 WP_269195024.1 1136629..1137615(+) (comQ) [Bacillus amyloliquefaciens strain JP5011]
GTGAAGACAATTATTGAGCAAATATGTTTAGATGCCAACCAAATCAAGAATAGAATGAAGAGTATAATAGAGCGGAACAT
ATTTAATGAACATCTAATGCAGCTCCTTCTCAGTTTTATTGAACCAAAAAAAAATTTTTCTCTAGCTGAATCAGCTGTTT
TGCATTATGTGATCTTTGACGGCGAAAATCAAGAAACCGCAGTGAACTTAGGTGCCGCTATTGAAATTCTTACACTTACT
TCCGATATAATTGATGATCTGGAAGATGAGGATAATCGAGATGCTCCTTGGATGAAGATAGATCGTTCACTAGCATTAAG
TGCAGCATTTTCATTATACACAGCAGGATTGCAAAGCATTAATTCGATTAGTACGAATCCTTTAGTGATTAAGTATGTAT
TAAAATATATTCAAGATGCAATGCAGGGTCAACATGATGATTTGATCAATAAACCAAAGACAGAAGATGAATGTTTAGAG
GTAATCAAGTTAAAATGCGGAAGTTTATTTGCGTTAGCAAATGTTACTGGTACGCTTTTAGCAACTGGAGAATTCAATAA
ATCTGTTGAAAGTTATTCCTATTATAAAGGGATATTTGAACAAATTTCCGGCGATTATCATGCTATTTTTAAGGATAATA
CTAGTGATATTCTGAAAGATAAACATACATTGATTAATTTATATCTTAAGCGCTTGTTTAATAAGTCTTCTCAAGAATTG
CTTTGTATATTCTCAGATCAAAAATTATATTCGCAACTGCGGCTTAATAAAAAAGAGTTTATCCAAAAGCTGTATGATTC
TGGAGCATCTCAATATGTTTCGGTTTTATACCAACTATACATGCATAAGTGTGAAACTGAAGTTGAAAATTTAAATTTAG
ATATAAAGAAGATAAAAATAATAAAAAAACACTTGTTGAATAATAAGAATAATAAGAAGGATGATGAAGATGCAGAATTT
AATAAATTATTTTTTGAATTATCCTGA

Domains


Predicted by InterproScan.

(59-232)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Bacillus subtilis subsp. subtilis str. 168

61.938

88.11

0.546


Multiple sequence alignment