Detailed information NTG1058057

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: ACFMKY_RS27025
• Genome accession: NZ_CP170569
• Coordinates: 5884773..5886107 (+)
• Length: 444 a.a.
• NCBI ID: WP_041119936.1
• Uniprot ID: -
• Organism: Pseudomonas protegens strain PS49
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5879773..5891107

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACFMKY_RS27005 (ACFMKY_27005)	pgeF	5881132..5881857 (-)	726	WP_019092897.1	peptidoglycan editing factor PgeF	-
ACFMKY_RS27010 (ACFMKY_27010)	rluD	5881854..5882816 (-)	963	WP_011063535.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
ACFMKY_RS27015 (ACFMKY_27015)	-	5882967..5883989 (+)	1023	WP_041119934.1	outer membrane protein assembly factor BamD	-
ACFMKY_RS27020 (ACFMKY_27020)	-	5884114..5884347 (+)	234	WP_041119935.1	PP0621 family protein	-
ACFMKY_RS27025 (ACFMKY_27025)	pilR	5884773..5886107 (+)	1335	WP_041119936.1	sigma-54 dependent transcriptional regulator	Regulator
ACFMKY_RS27030 (ACFMKY_27030)	thiO	5886104..5887204 (-)	1101	WP_041119937.1	glycine oxidase ThiO	-
ACFMKY_RS27035 (ACFMKY_27035)	-	5887258..5887659 (-)	402	WP_015637084.1	type IV pilin protein	-
ACFMKY_RS27040 (ACFMKY_27040)	-	5887675..5890737 (-)	3063	WP_350403729.1	PilC/PilY family type IV pilus protein	-

Sequence

Protein

• Length: 444 a.a.
• Molecular weight: 49247.48 Da
• Isoelectric Point: 8.6786

>NTDB_id=1058057 ACFMKY_RS27025 WP_041119936.1 5884773..5886107(+) (pilR) [Pseudomonas protegens strain PS49]
MNPRQSVLVVDDATETRALLEITLGRMRLHTQSARTLQEARGRLARERFDLCLTDLQLPDGSGLELLRHIRQSHPNLPVA
LLSNGACAQASAGALQAGACQLLHKPLDLKQLRAWVGASLKQATDCATDDPARQLLGDSAPMNALRRHIDKLAHSLAAVY
ISGESGSGKERVARLLHQLGPRAQYPFVPVNCGAIPSELMESELFGHCKGSFSGAVSDQPGLFLAAHGGTLFLDEVADLP
LAMQVKLLRALQEKSVRPVGSQQEKSVDVRILCATHKDLKNEVETGRFRQDLYYRLNVIELRVPALRERRGDIPALAGHV
LQRLARDSGQPAVKLRPEALQALERYDFPGNVRELENLLERAQTLCEGRWIETDDLQLPRADSLEARSSAAATQLDLALH
LQQVERQLLLQALEETRWNRTAAARRLSLSFRSMRYRMKKLGLD

Nucleotide

• Length: 1335 bp

>NTDB_id=1058057 ACFMKY_RS27025 WP_041119936.1 5884773..5886107(+) (pilR) [Pseudomonas protegens strain PS49]
ATGAACCCACGGCAATCGGTGCTGGTGGTCGATGACGCCACGGAAACCCGCGCCCTTCTGGAGATCACTCTGGGCCGAAT
GCGCTTGCACACCCAAAGTGCGCGCACCCTGCAGGAAGCCCGTGGCCGCCTGGCCCGGGAGCGCTTTGACCTGTGCCTGA
CCGACCTGCAGCTACCGGACGGCAGCGGGTTGGAGCTGCTGCGGCACATCCGCCAGTCCCACCCCAACCTTCCTGTGGCG
CTGCTAAGCAACGGCGCCTGTGCACAGGCCAGCGCCGGCGCCCTGCAGGCCGGAGCCTGCCAGTTGCTGCACAAGCCCCT
GGACCTCAAGCAACTGCGCGCTTGGGTAGGTGCCAGCCTGAAACAGGCTACGGACTGCGCAACGGATGACCCAGCCCGGC
AGTTGCTGGGGGACTCGGCGCCCATGAATGCCCTGCGTCGCCACATCGACAAGCTGGCCCACAGCCTGGCGGCGGTCTAT
ATCAGCGGCGAATCCGGCAGTGGCAAGGAACGGGTCGCCCGTCTGCTCCACCAGCTTGGCCCCAGGGCCCAATACCCGTT
CGTCCCGGTCAACTGCGGGGCGATTCCTTCCGAATTGATGGAGAGTGAACTCTTCGGCCATTGCAAAGGCAGCTTCAGTG
GCGCCGTCAGCGATCAGCCCGGGTTATTTCTGGCCGCCCACGGCGGCACCCTGTTTCTTGATGAGGTCGCCGACCTGCCC
CTGGCCATGCAAGTAAAACTGCTGCGAGCCTTGCAGGAAAAATCCGTGCGCCCTGTAGGCAGCCAACAGGAAAAATCCGT
CGACGTGCGGATTCTCTGTGCCACCCACAAGGACCTGAAAAACGAGGTAGAGACCGGACGCTTTCGCCAGGACCTCTACT
ACCGCCTGAACGTCATCGAGCTGCGAGTCCCGGCGTTGCGCGAGCGCCGTGGCGACATCCCCGCACTGGCCGGGCACGTC
CTGCAGCGCCTGGCCAGGGACAGCGGCCAGCCTGCCGTCAAGCTACGTCCCGAAGCCCTGCAAGCCCTGGAGCGCTATGA
CTTTCCGGGCAACGTGCGAGAGCTGGAAAACCTGCTGGAACGGGCGCAGACCCTATGCGAAGGACGCTGGATAGAAACAG
ACGATTTGCAGTTGCCCAGAGCCGACAGCCTTGAAGCCCGATCATCGGCGGCGGCCACCCAGCTAGACCTGGCGCTGCAC
CTGCAACAGGTGGAGCGCCAGCTGCTGCTCCAGGCCCTGGAGGAAACCCGCTGGAACCGCACGGCGGCGGCCCGGCGGCT
GAGCCTGTCGTTTCGTTCGATGCGTTACCGCATGAAGAAGCTCGGGCTGGACTAG

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (136-301)

• Response regulator receiver domain (Response_reg) (7-114)

• Bacterial regulatory protein, Fis family (HTH_8) (401-441)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	63.431	99.775	0.633
pilR	Acinetobacter baumannii strain A118	45.316	100	0.468
luxO	Vibrio cholerae strain A1552	37.558	97.748	0.367