Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ACFJY4_RS03285 Genome accession   NZ_CP170500
Coordinates   732518..733855 (-) Length   445 a.a.
NCBI ID   WP_192475512.1    Uniprot ID   -
Organism   Stutzerimonas stutzeri strain MBI-RS3     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 727518..738855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFJY4_RS03275 (ACFJY4_03275) - 729603..731198 (-) 1596 WP_014597755.1 PleD family two-component system response regulator -
  ACFJY4_RS03280 (ACFJY4_03280) - 731416..732474 (+) 1059 WP_011914666.1 DUF2333 family protein -
  ACFJY4_RS03285 (ACFJY4_03285) pilR 732518..733855 (-) 1338 WP_192475512.1 sigma-54 dependent transcriptional regulator Regulator
  ACFJY4_RS03290 (ACFJY4_03290) pilS 733986..735578 (-) 1593 WP_048329924.1 PAS domain-containing sensor histidine kinase Regulator
  ACFJY4_RS03295 (ACFJY4_03295) - 735568..735801 (-) 234 WP_013984074.1 PP0621 family protein -
  ACFJY4_RS03300 (ACFJY4_03300) - 735923..736912 (-) 990 WP_048329921.1 outer membrane protein assembly factor BamD -
  ACFJY4_RS03305 (ACFJY4_03305) rluD 737117..738091 (+) 975 WP_011914661.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ACFJY4_RS03310 (ACFJY4_03310) pgeF 738088..738825 (+) 738 WP_340066225.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49572.11 Da        Isoelectric Point: 6.4140

>NTDB_id=1057768 ACFJY4_RS03285 WP_192475512.1 732518..733855(-) (pilR) [Stutzerimonas stutzeri strain MBI-RS3]
MTARQKALIIDDEPDIRELLEITLGRMKLDTRSARNLKEARELLAREHYDLCLTDMRLPDGSGLELVQHIQQQYPQLPVA
MITAYGSLDTAIGALKAGAFDFLTKPVDLNRLRELVSTALRLRAPAAEAPVDSRLLGSSPPMKTLRKQIGKLARSQAPVY
ISGESGSGKELVARLIHEQGPRSEKPFVPVNCGAIPSELMESEFFGHKKGSFSGAIEDKPGLFQAANGGTLFLDEVADLP
LPMQVKLLRAIQEKAVRAVGGAQEVMVDVRILCATHKDLASEVAAGRFRQDLYYRLNVIELRVPPLRERREDIGLLADVM
LRRLAQECGEATARLHPDALAKLENYRFPGNVRELENMLERAYTLCEGDEIKAADLRLADSPGLPENGEASLAQIDNLED
HLEEIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=1057768 ACFJY4_RS03285 WP_192475512.1 732518..733855(-) (pilR) [Stutzerimonas stutzeri strain MBI-RS3]
ATGACCGCGCGCCAGAAAGCCCTGATCATCGACGACGAGCCGGACATCCGCGAGCTGCTGGAGATCACCCTCGGCCGCAT
GAAGCTCGATACCCGCAGCGCACGCAACCTAAAGGAGGCGCGCGAGCTGCTGGCACGCGAGCACTACGACCTGTGCCTGA
CCGATATGCGCCTGCCCGACGGCAGTGGCCTCGAGCTGGTCCAGCACATCCAGCAACAGTACCCGCAACTGCCCGTGGCG
ATGATCACCGCCTATGGCAGTCTGGATACCGCCATCGGCGCACTCAAGGCCGGTGCGTTCGACTTTCTCACCAAACCGGT
GGATCTGAACCGCCTGCGCGAGCTGGTCAGCACCGCCCTGCGCCTGCGCGCGCCCGCAGCCGAGGCGCCGGTGGACAGTC
GCCTGCTGGGCAGCTCGCCGCCGATGAAAACCTTGCGCAAGCAGATCGGCAAGCTCGCCCGCAGCCAGGCACCCGTCTAC
ATCAGCGGCGAGTCGGGCAGCGGCAAGGAACTGGTGGCACGCCTGATTCACGAGCAGGGCCCGCGCAGCGAAAAGCCATT
CGTGCCGGTCAACTGCGGTGCCATTCCGTCGGAGCTGATGGAAAGCGAGTTCTTCGGCCACAAGAAGGGCAGCTTCAGCG
GCGCCATCGAGGACAAGCCCGGCCTGTTCCAGGCCGCCAACGGTGGCACTCTGTTTCTCGACGAGGTGGCGGACCTGCCG
CTGCCGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAGGCCGTGCGTGCCGTTGGCGGTGCGCAGGAAGTGATGGT
CGATGTACGCATCCTCTGCGCCACCCACAAGGATCTCGCCAGCGAGGTCGCCGCAGGCCGTTTTCGCCAGGATCTCTACT
ACCGCCTGAATGTCATCGAACTGCGTGTACCGCCACTACGCGAACGCCGGGAAGACATCGGCCTGCTCGCCGATGTCATG
CTGCGCCGTCTGGCGCAGGAATGCGGCGAGGCCACGGCCCGCCTGCATCCCGATGCCCTGGCCAAGCTGGAGAACTATCG
CTTTCCGGGCAACGTCCGCGAGCTGGAGAACATGCTCGAACGCGCCTACACCTTGTGCGAAGGCGACGAGATCAAGGCTG
CCGACCTGCGCCTGGCGGATAGCCCAGGCCTGCCGGAAAACGGCGAAGCCAGCCTGGCGCAGATCGACAACCTGGAGGAC
CACCTGGAGGAGATCGAGCGCAAGCTGATCATGCAGGCCCTCGAAGAAACACGCTGGAACCGCACCGCGGCTGCCCAGCG
ACTGGGGCTGACCTTCCGCTCGATGCGCTACCGTCTGAAGAAACTCGGACTGGACTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-116)

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)

Sigma-54 interaction domain (Sigma54_activat)

(136-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

85.586

99.775

0.854
  pilR Acinetobacter baumannii strain A118

50.545

100

0.521
  luxO Vibrio cholerae strain A1552

38.117

100

0.382

Multiple sequence alignment