Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   ACFBML_RS04910 Genome accession   NZ_CP170491
Coordinates   1063961..1066219 (+) Length   752 a.a.
NCBI ID   WP_050902261.1    Uniprot ID   -
Organism   Vibrio harveyi strain LcV6     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1058961..1071219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFBML_RS04885 (ACFBML_04885) - 1059256..1059825 (-) 570 WP_009698318.1 PilZ domain-containing protein -
  ACFBML_RS04890 (ACFBML_04890) lolC 1060090..1061298 (+) 1209 WP_390338837.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  ACFBML_RS04895 (ACFBML_04895) lolD 1061291..1061998 (+) 708 WP_005446689.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  ACFBML_RS04900 (ACFBML_04900) lolE 1062001..1063245 (+) 1245 WP_009698315.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  ACFBML_RS04905 (ACFBML_04905) - 1063443..1063952 (-) 510 WP_005446692.1 DUF2062 domain-containing protein -
  ACFBML_RS04910 (ACFBML_04910) comEC 1063961..1066219 (+) 2259 WP_050902261.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACFBML_RS04915 (ACFBML_04915) msbA 1066251..1067999 (+) 1749 WP_029790264.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  ACFBML_RS04920 (ACFBML_04920) lpxK 1068005..1069012 (+) 1008 WP_390338840.1 tetraacyldisaccharide 4'-kinase -
  ACFBML_RS04925 (ACFBML_04925) - 1068993..1069172 (+) 180 WP_005378451.1 Trm112 family protein -
  ACFBML_RS04930 (ACFBML_04930) kdsB 1069172..1069930 (+) 759 WP_005446698.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 752 a.a.        Molecular weight: 84497.00 Da        Isoelectric Point: 9.6057

>NTDB_id=1057677 ACFBML_RS04910 WP_050902261.1 1063961..1066219(+) (comEC) [Vibrio harveyi strain LcV6]
MTLLEKSLTLALFVASVISSAWWPTIPDWRWLLLGIIATGSIIKLRRGLLSIGVISGFMVVIIHGNVMEHQRQALFQAGV
NITINGKVDSPFTQISHGYEGIARVHQVNSQNLLPFFKPKIRLITPFPLAVNSEFTTEVTIKPIFGLLNEAGHDAEKQAV
GKGIVARATVSKDSAWLIRERSSLRTQIIAVVHKHIVQLEHFALIRALAFSDRTLLSRYDWQLLRDSGLLHLVSISGLHI
GMAFAFGMSFGVVVRYALPKFVFLPSLFGLATAFLYSWLADFSLPTTRAFSVCLIYLLLKSALIYWSAWRVLLLAVAIQL
CIEPFSALTMSFWLSYLSVIAVLFAVNCVQHSRGNWIRKLGTLFKIQLVLTVLIIPISGLFFAGTSLSSILYNLIFIPWF
GFVVVPLMFVALIITPFSVHLANMLWQWLDWMLVPLTWSLPFALGSWQSLSSQATLWVLALGVCVLSMRFLNRETSGVLF
LVITSLALWYERKSDGWRIDVLDVGHGLAVLLEKDGEVLLYDTGKTWAYGSIAEQVIAPILYRRGFGSIDMFVVSHADSD
HAGGRAYIERHFAPVRKFSSQNYANYQPCIAGERWKWQALEFEVLWPPKLVKRAYNPHSCVIRVVDTKTDFKLLLTGDIE
AVSEWILVRNPDQLKSDVVIVPHHGSKSSSNPKFVEAIAPKLAIASLAKGNQWGMPANNVVLAYENANAKWLDTGNGGQI
SVLIEQENWYFETKRSETFDPWYRQMLRNGVE

Nucleotide


Download         Length: 2259 bp        

>NTDB_id=1057677 ACFBML_RS04910 WP_050902261.1 1063961..1066219(+) (comEC) [Vibrio harveyi strain LcV6]
ATGACTCTCTTAGAAAAAAGTTTGACCTTGGCTTTATTTGTAGCGAGCGTTATTTCGTCTGCATGGTGGCCGACGATACC
AGATTGGCGTTGGTTGCTGCTGGGAATAATTGCCACTGGCTCAATAATAAAATTACGACGTGGCTTATTGAGCATAGGCG
TAATTTCGGGCTTTATGGTTGTCATTATCCACGGCAATGTTATGGAGCATCAAAGACAAGCCCTGTTTCAAGCAGGGGTG
AATATTACCATAAATGGCAAAGTTGACAGCCCTTTTACGCAAATAAGTCACGGATATGAAGGAATTGCGCGTGTCCATCA
GGTGAATTCTCAAAACTTGTTACCTTTTTTTAAACCGAAAATCCGGTTGATAACGCCTTTCCCACTCGCCGTTAACAGTG
AGTTCACTACCGAAGTGACAATTAAACCCATCTTTGGGCTTTTAAACGAAGCAGGTCATGACGCCGAAAAGCAGGCAGTA
GGAAAGGGCATTGTCGCAAGGGCGACGGTTTCAAAGGATTCTGCGTGGCTTATTCGTGAGCGATCATCATTAAGAACGCA
AATTATCGCCGTCGTTCATAAGCACATTGTTCAGCTTGAACATTTCGCTCTTATTCGTGCTTTGGCGTTTAGTGACCGTA
CGCTTCTGTCTCGATATGACTGGCAACTCCTACGTGATAGTGGCTTACTGCATTTGGTTTCGATTTCGGGTTTACATATA
GGAATGGCGTTTGCTTTTGGTATGAGCTTTGGGGTTGTTGTTAGGTACGCTTTGCCAAAATTTGTCTTTTTACCTTCCTT
GTTTGGGCTTGCTACTGCTTTTTTGTATTCATGGTTAGCAGACTTCTCTTTGCCTACGACTCGAGCTTTTTCAGTATGTT
TGATTTACTTGTTATTAAAGTCTGCTTTGATTTATTGGAGCGCTTGGCGCGTGCTGCTCCTTGCTGTAGCAATACAGTTG
TGCATCGAGCCGTTTTCTGCACTCACTATGAGCTTTTGGCTGTCTTATCTCTCTGTTATCGCCGTTTTATTTGCAGTGAA
TTGTGTACAACATAGCCGTGGCAATTGGATTAGGAAACTGGGTACCTTATTCAAAATTCAGTTAGTACTCACTGTGTTGA
TCATTCCGATTAGTGGGTTGTTTTTTGCCGGGACGAGCCTCTCCTCTATTTTATATAACCTCATTTTTATCCCTTGGTTC
GGTTTTGTTGTCGTTCCACTGATGTTTGTTGCACTTATCATTACCCCGTTTTCAGTGCACTTGGCGAACATGCTGTGGCA
GTGGTTAGATTGGATGCTTGTACCCCTTACTTGGTCTTTGCCATTTGCTTTGGGGAGTTGGCAATCTCTTAGCTCACAGG
CAACGTTGTGGGTGCTGGCATTGGGCGTTTGTGTGCTTTCGATGCGATTTTTAAATCGAGAAACCTCAGGCGTTTTGTTC
TTGGTCATCACAAGTCTGGCGTTGTGGTATGAACGAAAATCCGATGGTTGGCGTATTGATGTGTTAGATGTTGGGCATGG
ACTTGCAGTGCTCCTAGAAAAAGACGGTGAAGTGCTTTTATATGACACGGGTAAAACATGGGCTTATGGAAGTATTGCTG
AACAAGTTATTGCTCCTATCTTGTATCGCAGAGGGTTCGGTTCTATCGACATGTTTGTCGTCAGTCACGCCGACTCAGAT
CATGCTGGAGGACGTGCATATATCGAAAGGCACTTCGCCCCAGTTCGTAAGTTTAGTAGCCAAAACTACGCTAACTACCA
ACCTTGTATTGCAGGGGAACGATGGAAATGGCAAGCGCTAGAATTTGAAGTTCTTTGGCCTCCGAAGTTGGTTAAACGTG
CATATAACCCACATTCATGCGTGATTCGTGTCGTCGATACCAAAACGGATTTTAAGTTGCTATTAACGGGCGATATTGAA
GCCGTTAGTGAATGGATCTTGGTGAGAAACCCCGATCAGTTAAAAAGTGATGTTGTGATTGTCCCGCATCACGGAAGTAA
AAGCTCTTCTAACCCCAAGTTTGTTGAAGCGATTGCCCCAAAACTGGCGATCGCATCTCTGGCAAAAGGGAATCAGTGGG
GAATGCCTGCAAATAACGTGGTTCTAGCGTACGAGAACGCCAATGCGAAATGGCTGGATACGGGGAATGGCGGTCAAATA
AGCGTCCTTATTGAGCAAGAGAATTGGTATTTTGAAACGAAACGAAGTGAGACATTTGACCCTTGGTATAGGCAGATGCT
GCGTAACGGAGTAGAATAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(208-467)

Metallo-beta-lactamase superfamily (Lactamase_B)

(504-685)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio campbellii strain DS40M4

75.399

100

0.754
  comEC Vibrio parahaemolyticus RIMD 2210633

65.027

100

0.65
  comEC Vibrio cholerae strain A1552

40.849

100

0.41

Multiple sequence alignment