Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   ACFDSG_RS04920 Genome accession   NZ_CP170487
Coordinates   948463..948825 (+) Length   120 a.a.
NCBI ID   WP_016765913.1    Uniprot ID   A0A1I2XGS5
Organism   Priestia megaterium strain AJ5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 943463..953825
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFDSG_RS04890 - 943650..944651 (+) 1002 WP_013085455.1 rod shape-determining protein -
  ACFDSG_RS04895 - 944766..945590 (+) 825 WP_095380197.1 flagellar hook-basal body protein -
  ACFDSG_RS04900 - 945614..946435 (+) 822 WP_016765917.1 flagellar hook-basal body protein -
  ACFDSG_RS04905 fabZ 946519..946953 (+) 435 WP_013059788.1 3-hydroxyacyl-ACP dehydratase FabZ -
  ACFDSG_RS04910 - 946982..947404 (-) 423 WP_034648293.1 helix-turn-helix domain-containing protein -
  ACFDSG_RS04915 - 947929..948366 (-) 438 WP_013085451.1 YwpF-like family protein -
  ACFDSG_RS04920 ssbB 948463..948825 (+) 363 WP_016765913.1 single-stranded DNA-binding protein Machinery gene
  ACFDSG_RS04925 - 949343..950389 (-) 1047 WP_377520675.1 LysM peptidoglycan-binding domain-containing protein -
  ACFDSG_RS04930 - 950688..953318 (-) 2631 WP_377520676.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13472.19 Da        Isoelectric Point: 7.1647

>NTDB_id=1057620 ACFDSG_RS04920 WP_016765913.1 948463..948825(+) (ssbB) [Priestia megaterium strain AJ5]
MINHIVLVGRLTKKPELRYTHEGIAVSTITLAINRTFRNVEGEYDADFVNITLWRKNAENTAAYCDKGAVVGVVGRVQTR
TFENNLQQRVYMTDVVADAVKFLSGKPSGFSSFDSNQQEE

Nucleotide


Download         Length: 363 bp        

>NTDB_id=1057620 ACFDSG_RS04920 WP_016765913.1 948463..948825(+) (ssbB) [Priestia megaterium strain AJ5]
ATGATTAACCATATTGTTCTTGTAGGAAGACTGACAAAAAAACCTGAGCTTAGATATACCCATGAAGGGATTGCAGTATC
TACTATTACTTTAGCAATTAATCGAACGTTTCGAAATGTTGAAGGTGAATATGATGCTGATTTTGTCAACATTACTCTGT
GGAGAAAAAATGCAGAAAATACGGCTGCTTACTGTGATAAAGGAGCGGTTGTAGGTGTAGTAGGGCGTGTACAAACGCGC
ACATTTGAAAATAATCTTCAGCAACGAGTATATATGACCGACGTTGTGGCTGATGCTGTTAAGTTTTTAAGTGGAAAGCC
ATCCGGTTTTTCTTCATTTGATTCAAATCAACAAGAAGAATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1I2XGS5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.813

89.167

0.533
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.547

88.333

0.508
  ssb Latilactobacillus sakei subsp. sakei 23K

52.83

88.333

0.467

Multiple sequence alignment