Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ACFIOT_RS08165 Genome accession   NZ_CP170414
Coordinates   1619121..1619993 (-) Length   290 a.a.
NCBI ID   WP_054190205.1    Uniprot ID   -
Organism   Staphylococcus aureus strain t5047     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1614121..1624993
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFIOT_RS08155 trmFO 1615409..1616716 (-) 1308 WP_054190203.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  ACFIOT_RS08160 topA 1616872..1618947 (-) 2076 WP_077446642.1 type I DNA topoisomerase -
  ACFIOT_RS08165 dprA 1619121..1619993 (-) 873 WP_054190205.1 DNA-processing protein DprA Machinery gene
  ACFIOT_RS08170 sucD 1620317..1621225 (-) 909 WP_000110253.1 succinate--CoA ligase subunit alpha -
  ACFIOT_RS08175 sucC 1621247..1622413 (-) 1167 WP_001020801.1 ADP-forming succinate--CoA ligase subunit beta -
  ACFIOT_RS08180 - 1622522..1623289 (-) 768 WP_054190206.1 ribonuclease HII -
  ACFIOT_RS08185 ylqF 1623273..1624156 (-) 884 Protein_1581 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33168.55 Da        Isoelectric Point: 8.9426

>NTDB_id=1056986 ACFIOT_RS08165 WP_054190205.1 1619121..1619993(-) (dprA) [Staphylococcus aureus strain t5047]
MLNHILLKLIWSRFTTAQIHLLLKTFPSCCEVDEYERMHILENFCKLLADKKIDAKVNRYKEISVDKIETTIQKTQLNYI
TCFDHNYPYLLKETYNYPIILFYKGNINLLSYPRTLAVVGSRLSGDYTLKALNHLFASFQQMSFCVVSGLAQGADAMAHQ
IALKYNLPTIAVLAFGHQTHYPKSTLALRNKIEEKGLVISEYPPHTPIAKYRFPERNRIISGLSKGVLITEAKEQSGSHI
TIDFALEQNRNVYVLPGSMFNPMTKGNLLRIQEGAKVVLNANDILEDYYI

Nucleotide


Download         Length: 873 bp        

>NTDB_id=1056986 ACFIOT_RS08165 WP_054190205.1 1619121..1619993(-) (dprA) [Staphylococcus aureus strain t5047]
ATGTTAAATCACATTTTACTTAAATTAATTTGGAGTCGTTTTACTACTGCACAAATACATCTACTTTTAAAAACATTTCC
AAGTTGTTGTGAAGTAGACGAATATGAACGAATGCATATTCTAGAAAATTTTTGTAAGCTTTTAGCGGATAAAAAAATAG
ATGCTAAAGTTAACCGTTACAAGGAAATTTCTGTTGATAAAATTGAAACAACAATTCAGAAAACCCAATTAAATTACATA
ACCTGTTTTGATCATAATTATCCCTATTTATTAAAAGAAACTTACAATTATCCTATCATTTTGTTCTATAAAGGGAATAT
TAACCTCCTTAGTTATCCGCGCACTTTAGCTGTCGTTGGGTCAAGATTGTCAGGCGACTATACTTTAAAGGCATTGAATC
ATCTCTTCGCTTCATTTCAACAAATGAGTTTCTGTGTCGTTTCCGGTCTTGCTCAAGGAGCTGATGCAATGGCACATCAA
ATAGCTTTAAAATACAATCTCCCTACAATAGCAGTTTTAGCCTTTGGCCATCAAACACATTATCCCAAAAGTACATTAGC
ATTAAGGAATAAAATAGAAGAAAAAGGTTTAGTGATATCCGAATATCCACCACATACACCAATTGCTAAATATAGATTTC
CTGAGCGTAATAGAATTATCAGCGGTTTGTCAAAAGGGGTTTTAATAACTGAGGCTAAGGAACAAAGTGGTAGTCACATC
ACGATAGATTTTGCATTAGAGCAAAATAGAAATGTTTATGTTTTGCCAGGATCAATGTTTAATCCTATGACAAAAGGTAA
TTTATTACGTATCCAAGAAGGTGCTAAGGTAGTTTTAAACGCTAATGATATATTAGAGGATTACTATATTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

65.017

100

0.679
  dprA Staphylococcus aureus N315

66.207

100

0.662
  dprA Lactococcus lactis subsp. cremoris KW2

38.929

96.552

0.376
  dprA Vibrio campbellii strain DS40M4

39.483

93.448

0.369

Multiple sequence alignment