Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   ACFIOT_RS05900 Genome accession   NZ_CP170414
Coordinates   1152670..1154871 (+) Length   733 a.a.
NCBI ID   WP_054190049.1    Uniprot ID   -
Organism   Staphylococcus aureus strain t5047     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1147670..1159871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFIOT_RS05860 aroE 1148067..1148873 (+) 807 WP_054190052.1 shikimate dehydrogenase -
  ACFIOT_RS05865 yhbY 1148877..1149167 (+) 291 WP_000955231.1 ribosome assembly RNA-binding protein YhbY -
  ACFIOT_RS05870 nadD 1149170..1149739 (+) 570 WP_054190051.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  ACFIOT_RS05875 yqeK 1149729..1150313 (+) 585 WP_001019325.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  ACFIOT_RS05880 rsfS 1150314..1150667 (+) 354 WP_001088020.1 ribosome silencing factor -
  ACFIOT_RS05885 - 1150670..1151386 (+) 717 WP_000084829.1 class I SAM-dependent DNA methyltransferase -
  ACFIOT_RS05890 comEA 1151426..1152112 (+) 687 WP_077446658.1 ComEA family DNA-binding protein Machinery gene
  ACFIOT_RS05895 - 1152204..1152665 (+) 462 WP_000439693.1 ComE operon protein 2 -
  ACFIOT_RS05900 comEC 1152670..1154871 (+) 2202 WP_054190049.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACFIOT_RS05905 holA 1154928..1155902 (+) 975 WP_001282570.1 DNA polymerase III subunit delta -
  ACFIOT_RS05910 rpsT 1155947..1156198 (-) 252 WP_001274017.1 30S ribosomal protein S20 -
  ACFIOT_RS05915 lepA 1156544..1158367 (+) 1824 WP_000368338.1 translation elongation factor 4 -

Sequence

Protein


Download         Length: 733 a.a.        Molecular weight: 84813.96 Da        Isoelectric Point: 10.0120

>NTDB_id=1056975 ACFIOT_RS05900 WP_054190049.1 1152670..1154871(+) (comEC) [Staphylococcus aureus strain t5047]
MLYVALSMIVGVLWNSSKVLSTFLFILLLFIAYRKNKIVYAPISLFLIIFSSWYLHYSQQAMYNYINYIERNPQFNERAQ
VIQIQRQGSDTYKGRLSLKNEIYPFFLTDKKNFDLKKIESRNCIVKGQFKVNDNKFITLKLQSIVEQSCIKSNRSNLIEK
HKQFIMNRIYDSGINFPDRIMALITGDVKEINEQFKERVKEIGIYHLLAVSGSHIAAIVFLIYQPLKRLNLPLFVIKGIT
IIILALFAQYTNYAPSAVRAIIMTTLVLLITKQIKIKGIQLLAFAFIIMFILNPLVVYDIGFQFSFIISFFIMLLFPFLQ
RLSKLQSLFIISFIAQLASFIVAIPNFHQLQWVGFLSNLIFVPYYSIILFPLSILFFITSHFIVGLTPLNYLVDLSFNFH
DWILDLFTRIKQSHFSVPKFNDWIFILFIISVYYIFWLLAKRKYILVTFCTIIILTLLITYPTNSHHKITMLNVGQGDSI
LYEGGKNQNVLIDTGGKVIDDIKHPSFSISKYHILPTLNERGINELEYLILTHPHNDHIGEVEYIISHIKIKHIVIYNKG
YSSKTLMLLSKLSHKYNIKLMDVRQVSSFKLGDSSFLFFDSFIPNSRDKNEYSIITMITYQNKKVLLMGDASKNNESLLL
KKYNLPEIDILKVGHHGSKTSSSKEFIEVIKPKISLISSGKNNMYHLPNIEVVKRLQGIRSRIYNSQQNGQVTIDLDDNL
KVDSNSYGNASGL

Nucleotide


Download         Length: 2202 bp        

>NTDB_id=1056975 ACFIOT_RS05900 WP_054190049.1 1152670..1154871(+) (comEC) [Staphylococcus aureus strain t5047]
TTGCTGTATGTCGCGTTATCAATGATTGTAGGAGTGCTTTGGAATTCTAGCAAAGTGCTCTCTACATTTCTTTTCATTTT
ACTTTTGTTTATAGCTTATCGTAAAAATAAAATCGTTTATGCTCCTATTTCTCTCTTTTTAATCATTTTCTCCTCATGGT
ATTTACATTATTCACAACAAGCAATGTATAATTATATCAATTATATTGAACGTAATCCTCAGTTTAATGAGCGTGCTCAA
GTAATCCAAATTCAACGTCAAGGTAGTGACACATATAAAGGTAGGTTGAGTTTAAAAAATGAAATATATCCTTTCTTTTT
AACAGATAAAAAGAATTTTGATTTAAAGAAAATTGAAAGTCGTAATTGTATTGTTAAAGGACAATTCAAAGTTAATGACA
ATAAGTTTATAACTCTTAAATTACAAAGTATAGTTGAGCAAAGCTGTATAAAATCGAACCGGTCTAATTTAATTGAGAAA
CATAAACAGTTTATAATGAATCGAATTTATGATTCGGGTATTAACTTTCCAGATCGTATTATGGCATTGATTACTGGTGA
CGTAAAAGAAATTAATGAGCAATTTAAAGAACGTGTTAAAGAGATAGGTATATATCATTTGCTGGCAGTTAGTGGCTCGC
ATATAGCTGCAATTGTATTCTTAATTTACCAACCTTTAAAACGATTAAATTTACCTTTATTTGTCATTAAAGGAATTACA
ATCATTATATTAGCTTTATTTGCTCAATACACAAATTATGCACCTAGTGCTGTAAGAGCTATAATAATGACAACTCTTGT
ACTGCTTATTACTAAGCAAATTAAAATAAAGGGTATTCAGCTATTAGCATTTGCATTTATAATTATGTTTATTTTGAATC
CACTAGTTGTTTATGATATTGGATTTCAATTTTCATTCATCATTTCATTTTTTATTATGCTACTTTTTCCTTTTTTACAG
CGATTGTCAAAATTACAATCATTATTCATAATTTCGTTTATTGCACAATTAGCTTCATTTATCGTTGCCATTCCAAACTT
TCATCAACTTCAATGGGTGGGATTTTTATCTAATTTGATTTTTGTACCGTACTATTCGATTATATTGTTTCCTCTATCTA
TTTTATTCTTTATTACAAGCCATTTTATTGTGGGATTAACGCCGCTAAATTACTTGGTTGACCTAAGTTTTAATTTTCAT
GACTGGATACTGGACCTATTCACAAGAATCAAGCAATCACATTTTTCTGTTCCCAAGTTTAATGATTGGATATTTATATT
ATTTATAATTTCTGTTTATTACATATTTTGGTTATTGGCTAAACGTAAATATATATTGGTTACGTTTTGCACTATAATTA
TTCTGACATTATTAATAACGTATCCAACAAATTCACATCACAAAATTACAATGTTAAATGTGGGGCAGGGAGACAGTATT
TTATATGAAGGTGGTAAAAACCAAAACGTCTTGATTGATACAGGTGGGAAAGTGATTGATGATATTAAACACCCTAGTTT
TTCAATTTCTAAATATCATATTTTACCAACGCTAAATGAAAGAGGGATAAATGAATTAGAGTATCTAATTTTAACACATC
CACACAATGACCATATTGGTGAAGTGGAATATATTATTAGTCATATTAAAATTAAACATATTGTGATTTACAATAAGGGA
TATAGTAGTAAAACATTGATGTTATTATCGAAATTAAGCCATAAGTATAATATTAAACTTATGGATGTAAGACAAGTTAG
TAGTTTTAAACTTGGAGATAGTAGTTTTCTATTTTTTGATAGTTTTATTCCAAATAGCCGAGATAAAAATGAATATTCGA
TTATTACTATGATTACATATCAAAATAAAAAAGTTTTATTAATGGGCGATGCTAGTAAAAATAATGAATCTTTACTACTA
AAAAAATATAACTTGCCGGAGATTGATATTTTAAAAGTAGGACATCATGGGAGCAAGACAAGTAGTTCCAAAGAATTTAT
AGAGGTGATTAAGCCTAAAATAAGTTTGATTTCTTCTGGAAAGAACAATATGTATCATCTTCCTAACATAGAAGTTGTTA
AACGATTACAAGGGATTCGCAGTCGCATTTACAATAGTCAACAAAACGGTCAAGTTACAATAGACTTGGATGATAATTTA
AAAGTTGATTCAAACTCTTATGGAAATGCAAGTGGTTTATAG

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(474-679)

Competence protein (Competence)

(183-441)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Staphylococcus aureus N315

96.453

100

0.965
  comEC Staphylococcus aureus MW2

96.044

100

0.96

Multiple sequence alignment