Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   ACFIOT_RS05890 Genome accession   NZ_CP170414
Coordinates   1151426..1152112 (+) Length   228 a.a.
NCBI ID   WP_077446658.1    Uniprot ID   -
Organism   Staphylococcus aureus strain t5047     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1146426..1157112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFIOT_RS05855 yqeH 1146953..1148053 (+) 1101 WP_054190053.1 ribosome biogenesis GTPase YqeH -
  ACFIOT_RS05860 aroE 1148067..1148873 (+) 807 WP_054190052.1 shikimate dehydrogenase -
  ACFIOT_RS05865 yhbY 1148877..1149167 (+) 291 WP_000955231.1 ribosome assembly RNA-binding protein YhbY -
  ACFIOT_RS05870 nadD 1149170..1149739 (+) 570 WP_054190051.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  ACFIOT_RS05875 yqeK 1149729..1150313 (+) 585 WP_001019325.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  ACFIOT_RS05880 rsfS 1150314..1150667 (+) 354 WP_001088020.1 ribosome silencing factor -
  ACFIOT_RS05885 - 1150670..1151386 (+) 717 WP_000084829.1 class I SAM-dependent DNA methyltransferase -
  ACFIOT_RS05890 comEA 1151426..1152112 (+) 687 WP_077446658.1 ComEA family DNA-binding protein Machinery gene
  ACFIOT_RS05895 - 1152204..1152665 (+) 462 WP_000439693.1 ComE operon protein 2 -
  ACFIOT_RS05900 comEC 1152670..1154871 (+) 2202 WP_054190049.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACFIOT_RS05905 holA 1154928..1155902 (+) 975 WP_001282570.1 DNA polymerase III subunit delta -
  ACFIOT_RS05910 rpsT 1155947..1156198 (-) 252 WP_001274017.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25873.54 Da        Isoelectric Point: 9.3381

>NTDB_id=1056973 ACFIOT_RS05890 WP_077446658.1 1151426..1152112(+) (comEA) [Staphylococcus aureus strain t5047]
MVLLYQFLLRYRDFLIQWKLYIISAVVLIMILIGFIFWRQDDYTSRDFENKDTALKQSTSENNSLSKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIGVNSVHVKN
GNTNNTKVNLNTASESELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=1056973 ACFIOT_RS05890 WP_077446658.1 1151426..1152112(+) (comEA) [Staphylococcus aureus strain t5047]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAGAGATTTTTTAATTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGATATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAGATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAATAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGGAGTAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGAATCAGAATTGATGTCTGTTCCTGGAGTTGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus N315

96.916

99.561

0.965
  comEA Staphylococcus aureus MW2

96.035

99.561

0.956

Multiple sequence alignment