Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   ACFIOO_RS07560 Genome accession   NZ_CP170406
Coordinates   1587304..1587990 (-) Length   228 a.a.
NCBI ID   WP_077446658.1    Uniprot ID   -
Organism   Staphylococcus aureus strain t21635     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1582304..1592990
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFIOO_RS07540 rpsT 1583218..1583469 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  ACFIOO_RS07545 holA 1583514..1584488 (-) 975 WP_001282570.1 DNA polymerase III subunit delta -
  ACFIOO_RS07550 comEC 1584545..1586746 (-) 2202 WP_054190049.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACFIOO_RS07555 - 1586751..1587212 (-) 462 WP_000439693.1 ComE operon protein 2 -
  ACFIOO_RS07560 comEA 1587304..1587990 (-) 687 WP_077446658.1 ComEA family DNA-binding protein Machinery gene
  ACFIOO_RS07565 - 1588030..1588746 (-) 717 WP_000084829.1 class I SAM-dependent DNA methyltransferase -
  ACFIOO_RS07570 rsfS 1588749..1589102 (-) 354 WP_001088020.1 ribosome silencing factor -
  ACFIOO_RS07575 yqeK 1589103..1589687 (-) 585 WP_001019325.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  ACFIOO_RS07580 nadD 1589677..1590246 (-) 570 WP_054190051.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  ACFIOO_RS07585 yhbY 1590249..1590539 (-) 291 WP_000955231.1 ribosome assembly RNA-binding protein YhbY -
  ACFIOO_RS07590 aroE 1590543..1591349 (-) 807 WP_054190052.1 shikimate dehydrogenase -
  ACFIOO_RS07595 yqeH 1591363..1592463 (-) 1101 WP_054190053.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25873.54 Da        Isoelectric Point: 9.3381

>NTDB_id=1056856 ACFIOO_RS07560 WP_077446658.1 1587304..1587990(-) (comEA) [Staphylococcus aureus strain t21635]
MVLLYQFLLRYRDFLIQWKLYIISAVVLIMILIGFIFWRQDDYTSRDFENKDTALKQSTSENNSLSKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIGVNSVHVKN
GNTNNTKVNLNTASESELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=1056856 ACFIOO_RS07560 WP_077446658.1 1587304..1587990(-) (comEA) [Staphylococcus aureus strain t21635]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAGAGATTTTTTAATTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGATATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAGATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAATAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGGAGTAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGAATCAGAATTGATGTCTGTTCCTGGAGTTGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus N315

96.916

99.561

0.965
  comEA Staphylococcus aureus MW2

96.035

99.561

0.956

Multiple sequence alignment