Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   ACFIOO_RS07550 Genome accession   NZ_CP170406
Coordinates   1584545..1586746 (-) Length   733 a.a.
NCBI ID   WP_054190049.1    Uniprot ID   -
Organism   Staphylococcus aureus strain t21635     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1579545..1591746
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFIOO_RS07535 lepA 1581049..1582872 (-) 1824 WP_000368338.1 translation elongation factor 4 -
  ACFIOO_RS07540 rpsT 1583218..1583469 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  ACFIOO_RS07545 holA 1583514..1584488 (-) 975 WP_001282570.1 DNA polymerase III subunit delta -
  ACFIOO_RS07550 comEC 1584545..1586746 (-) 2202 WP_054190049.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACFIOO_RS07555 - 1586751..1587212 (-) 462 WP_000439693.1 ComE operon protein 2 -
  ACFIOO_RS07560 comEA 1587304..1587990 (-) 687 WP_077446658.1 ComEA family DNA-binding protein Machinery gene
  ACFIOO_RS07565 - 1588030..1588746 (-) 717 WP_000084829.1 class I SAM-dependent DNA methyltransferase -
  ACFIOO_RS07570 rsfS 1588749..1589102 (-) 354 WP_001088020.1 ribosome silencing factor -
  ACFIOO_RS07575 yqeK 1589103..1589687 (-) 585 WP_001019325.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  ACFIOO_RS07580 nadD 1589677..1590246 (-) 570 WP_054190051.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  ACFIOO_RS07585 yhbY 1590249..1590539 (-) 291 WP_000955231.1 ribosome assembly RNA-binding protein YhbY -
  ACFIOO_RS07590 aroE 1590543..1591349 (-) 807 WP_054190052.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 733 a.a.        Molecular weight: 84813.96 Da        Isoelectric Point: 10.0120

>NTDB_id=1056854 ACFIOO_RS07550 WP_054190049.1 1584545..1586746(-) (comEC) [Staphylococcus aureus strain t21635]
MLYVALSMIVGVLWNSSKVLSTFLFILLLFIAYRKNKIVYAPISLFLIIFSSWYLHYSQQAMYNYINYIERNPQFNERAQ
VIQIQRQGSDTYKGRLSLKNEIYPFFLTDKKNFDLKKIESRNCIVKGQFKVNDNKFITLKLQSIVEQSCIKSNRSNLIEK
HKQFIMNRIYDSGINFPDRIMALITGDVKEINEQFKERVKEIGIYHLLAVSGSHIAAIVFLIYQPLKRLNLPLFVIKGIT
IIILALFAQYTNYAPSAVRAIIMTTLVLLITKQIKIKGIQLLAFAFIIMFILNPLVVYDIGFQFSFIISFFIMLLFPFLQ
RLSKLQSLFIISFIAQLASFIVAIPNFHQLQWVGFLSNLIFVPYYSIILFPLSILFFITSHFIVGLTPLNYLVDLSFNFH
DWILDLFTRIKQSHFSVPKFNDWIFILFIISVYYIFWLLAKRKYILVTFCTIIILTLLITYPTNSHHKITMLNVGQGDSI
LYEGGKNQNVLIDTGGKVIDDIKHPSFSISKYHILPTLNERGINELEYLILTHPHNDHIGEVEYIISHIKIKHIVIYNKG
YSSKTLMLLSKLSHKYNIKLMDVRQVSSFKLGDSSFLFFDSFIPNSRDKNEYSIITMITYQNKKVLLMGDASKNNESLLL
KKYNLPEIDILKVGHHGSKTSSSKEFIEVIKPKISLISSGKNNMYHLPNIEVVKRLQGIRSRIYNSQQNGQVTIDLDDNL
KVDSNSYGNASGL

Nucleotide


Download         Length: 2202 bp        

>NTDB_id=1056854 ACFIOO_RS07550 WP_054190049.1 1584545..1586746(-) (comEC) [Staphylococcus aureus strain t21635]
TTGCTGTATGTCGCGTTATCAATGATTGTAGGAGTGCTTTGGAATTCTAGCAAAGTGCTCTCTACATTTCTTTTCATTTT
ACTTTTGTTTATAGCTTATCGTAAAAATAAAATCGTTTATGCTCCTATTTCTCTCTTTTTAATCATTTTCTCCTCATGGT
ATTTACATTATTCACAACAAGCAATGTATAATTATATCAATTATATTGAACGTAATCCTCAGTTTAATGAGCGTGCTCAA
GTAATCCAAATTCAACGTCAAGGTAGTGACACATATAAAGGTAGGTTGAGTTTAAAAAATGAAATATATCCTTTCTTTTT
AACAGATAAAAAGAATTTTGATTTAAAGAAAATTGAAAGTCGTAATTGTATTGTTAAAGGACAATTCAAAGTTAATGACA
ATAAGTTTATAACTCTTAAATTACAAAGTATAGTTGAGCAAAGCTGTATAAAATCGAACCGGTCTAATTTAATTGAGAAA
CATAAACAGTTTATAATGAATCGAATTTATGATTCGGGTATTAACTTTCCAGATCGTATTATGGCATTGATTACTGGTGA
CGTAAAAGAAATTAATGAGCAATTTAAAGAACGTGTTAAAGAGATAGGTATATATCATTTGCTGGCAGTTAGTGGCTCGC
ATATAGCTGCAATTGTATTCTTAATTTACCAACCTTTAAAACGATTAAATTTACCTTTATTTGTCATTAAAGGAATTACA
ATCATTATATTAGCTTTATTTGCTCAATACACAAATTATGCACCTAGTGCTGTAAGAGCTATAATAATGACAACTCTTGT
ACTGCTTATTACTAAGCAAATTAAAATAAAGGGTATTCAGCTATTAGCATTTGCATTTATAATTATGTTTATTTTGAATC
CACTAGTTGTTTATGATATTGGATTTCAATTTTCATTCATCATTTCATTTTTTATTATGCTACTTTTTCCTTTTTTACAG
CGATTGTCAAAATTACAATCATTATTCATAATTTCGTTTATTGCACAATTAGCTTCATTTATCGTTGCCATTCCAAACTT
TCATCAACTTCAATGGGTGGGATTTTTATCTAATTTGATTTTTGTACCGTACTATTCGATTATATTGTTTCCTCTATCTA
TTTTATTCTTTATTACAAGCCATTTTATTGTGGGATTAACGCCGCTAAATTACTTGGTTGACCTAAGTTTTAATTTTCAT
GACTGGATACTGGACCTATTCACAAGAATCAAGCAATCACATTTTTCTGTTCCCAAGTTTAATGATTGGATATTTATATT
ATTTATAATTTCTGTTTATTACATATTTTGGTTATTGGCTAAACGTAAATATATATTGGTTACGTTTTGCACTATAATTA
TTCTGACATTATTAATAACGTATCCAACAAATTCACATCACAAAATTACAATGTTAAATGTGGGGCAGGGAGACAGTATT
TTATATGAAGGTGGTAAAAACCAAAACGTCTTGATTGATACAGGTGGGAAAGTGATTGATGATATTAAACACCCTAGTTT
TTCAATTTCTAAATATCATATTTTACCAACGCTAAATGAAAGAGGGATAAATGAATTAGAGTATCTAATTTTAACACATC
CACACAATGACCATATTGGTGAAGTGGAATATATTATTAGTCATATTAAAATTAAACATATTGTGATTTACAATAAGGGA
TATAGTAGTAAAACATTGATGTTATTATCGAAATTAAGCCATAAGTATAATATTAAACTTATGGATGTAAGACAAGTTAG
TAGTTTTAAACTTGGAGATAGTAGTTTTCTATTTTTTGATAGTTTTATTCCAAATAGCCGAGATAAAAATGAATATTCGA
TTATTACTATGATTACATATCAAAATAAAAAAGTTTTATTAATGGGCGATGCTAGTAAAAATAATGAATCTTTACTACTA
AAAAAATATAACTTGCCGGAGATTGATATTTTAAAAGTAGGACATCATGGGAGCAAGACAAGTAGTTCCAAAGAATTTAT
AGAGGTGATTAAGCCTAAAATAAGTTTGATTTCTTCTGGAAAGAACAATATGTATCATCTTCCTAACATAGAAGTTGTTA
AACGATTACAAGGGATTCGCAGTCGCATTTACAATAGTCAACAAAACGGTCAAGTTACAATAGACTTGGATGATAATTTA
AAAGTTGATTCAAACTCTTATGGAAATGCAAGTGGTTTATAG

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(474-679)

Competence protein (Competence)

(183-441)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Staphylococcus aureus N315

96.453

100

0.965
  comEC Staphylococcus aureus MW2

96.044

100

0.96

Multiple sequence alignment