Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   ACFIOJ_RS06205 Genome accession   NZ_CP170391
Coordinates   1207425..1207871 (+) Length   148 a.a.
NCBI ID   WP_077446655.1    Uniprot ID   -
Organism   Staphylococcus aureus strain t21642     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1202425..1212871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFIOJ_RS06170 - 1202919..1203122 (+) 204 WP_000087561.1 YqgQ family protein -
  ACFIOJ_RS06175 - 1203119..1204105 (+) 987 WP_000161315.1 ROK family glucokinase -
  ACFIOJ_RS06180 - 1204105..1204434 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  ACFIOJ_RS06185 - 1204431..1205054 (+) 624 WP_054190028.1 MBL fold metallo-hydrolase -
  ACFIOJ_RS06190 comGA 1205106..1206080 (+) 975 WP_054191886.1 competence type IV pilus ATPase ComGA Machinery gene
  ACFIOJ_RS06195 comGB 1206052..1207122 (+) 1071 WP_410533933.1 competence type IV pilus assembly protein ComGB Machinery gene
  ACFIOJ_RS06200 comGC 1207136..1207447 (+) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  ACFIOJ_RS06205 comGD 1207425..1207871 (+) 447 WP_077446655.1 competence type IV pilus minor pilin ComGD Machinery gene
  ACFIOJ_RS06210 comGE 1207858..1208157 (+) 300 WP_410533935.1 competence protein ComGE Machinery gene
  ACFIOJ_RS06215 comGF 1208075..1208572 (+) 498 WP_410533936.1 competence type IV pilus minor pilin ComGF Machinery gene
  ACFIOJ_RS06220 - 1208669..1208815 (+) 147 WP_410533937.1 hypothetical protein -
  ACFIOJ_RS06225 - 1208805..1209329 (+) 525 WP_054190023.1 shikimate kinase -
  ACFIOJ_RS06230 gcvT 1209488..1210579 (+) 1092 WP_410533939.1 glycine cleavage system aminomethyltransferase GcvT -
  ACFIOJ_RS06235 gcvPA 1210599..1211945 (+) 1347 WP_410533941.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17120.24 Da        Isoelectric Point: 10.4350

>NTDB_id=1056603 ACFIOJ_RS06205 WP_077446655.1 1207425..1207871(+) (comGD) [Staphylococcus aureus strain t21642]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISLITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVNSISFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=1056603 ACFIOJ_RS06205 WP_077446655.1 1207425..1207871(+) (comGD) [Staphylococcus aureus strain t21642]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAAATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTTTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTCTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACAATTAAAGTAATAGAGAATAATAAAATCCGATTTCTAAAATTAAAAGTAGGTAAAATAATTAATGTTGCAAAAGTTAA
TAGTATTTCCTTTGATAAAAAGGGGAATATCAATAAATTTGGTAGCATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

97.297

100

0.973
  comGD Staphylococcus aureus N315

97.297

100

0.973

Multiple sequence alignment