Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   ACFIOH_RS06120 Genome accession   NZ_CP170389
Coordinates   1192262..1192708 (+) Length   148 a.a.
NCBI ID   WP_077446655.1    Uniprot ID   -
Organism   Staphylococcus aureus strain t14667     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1187262..1197708
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFIOH_RS06085 - 1187756..1187959 (+) 204 WP_000087561.1 YqgQ family protein -
  ACFIOH_RS06090 - 1187956..1188942 (+) 987 WP_000161315.1 ROK family glucokinase -
  ACFIOH_RS06095 - 1188942..1189271 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  ACFIOH_RS06100 - 1189268..1189891 (+) 624 WP_054190028.1 MBL fold metallo-hydrolase -
  ACFIOH_RS06105 comGA 1189943..1190917 (+) 975 WP_054191886.1 competence type IV pilus ATPase ComGA Machinery gene
  ACFIOH_RS06110 comGB 1190889..1191959 (+) 1071 WP_054190027.1 competence type IV pilus assembly protein ComGB Machinery gene
  ACFIOH_RS06115 comGC 1191973..1192284 (+) 312 WP_054190026.1 competence type IV pilus major pilin ComGC Machinery gene
  ACFIOH_RS06120 comGD 1192262..1192708 (+) 447 WP_077446655.1 competence type IV pilus minor pilin ComGD Machinery gene
  ACFIOH_RS06125 comGE 1192695..1192994 (+) 300 WP_054190024.1 hypothetical protein Machinery gene
  ACFIOH_RS06130 comGF 1192912..1193409 (+) 498 WP_077446653.1 competence type IV pilus minor pilin ComGF Machinery gene
  ACFIOH_RS06135 - 1193506..1193652 (+) 147 WP_001789879.1 hypothetical protein -
  ACFIOH_RS06140 - 1193642..1194166 (+) 525 WP_054190023.1 shikimate kinase -
  ACFIOH_RS06145 gcvT 1194325..1195416 (+) 1092 WP_054190022.1 glycine cleavage system aminomethyltransferase GcvT -
  ACFIOH_RS06150 gcvPA 1195436..1196782 (+) 1347 WP_054190021.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17120.24 Da        Isoelectric Point: 10.4350

>NTDB_id=1056564 ACFIOH_RS06120 WP_077446655.1 1192262..1192708(+) (comGD) [Staphylococcus aureus strain t14667]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISLITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVNSISFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=1056564 ACFIOH_RS06120 WP_077446655.1 1192262..1192708(+) (comGD) [Staphylococcus aureus strain t14667]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAAATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTTTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTCTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACAATTAAAGTAATAGAGAATAATAAAATCCGATTTCTAAAATTAAAAGTAGGTAAAATAATTAATGTTGCAAAAGTTAA
TAGTATTTCCTTTGATAAAAAGGGGAATATCAATAAATTTGGTAGCATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

97.297

100

0.973
  comGD Staphylococcus aureus N315

97.297

100

0.973

Multiple sequence alignment