Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsD   Type   Machinery gene
Locus tag   R8609_RS07650 Genome accession   NZ_AP028412
Coordinates   1500955..1502367 (-) Length   470 a.a.
NCBI ID   WP_002856543.1    Uniprot ID   A0A2R4CZP6
Organism   Campylobacter jejuni strain IDH-12128     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1495955..1507367
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8609_RS07625 (I12128_15260) - 1496279..1497043 (+) 765 WP_002860344.1 TSUP family transporter -
  R8609_RS07630 (I12128_15270) ctsF 1497036..1498217 (-) 1182 WP_032584551.1 type II secretion system F family protein Machinery gene
  R8609_RS07635 (I12128_15280) ctsE 1498214..1499773 (-) 1560 WP_032597243.1 GspE/PulE family protein Machinery gene
  R8609_RS07640 (I12128_15290) ctsX 1499763..1500350 (-) 588 WP_002934760.1 hypothetical protein Machinery gene
  R8609_RS07645 (I12128_15300) ctsP 1500354..1500962 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  R8609_RS07650 (I12128_15310) ctsD 1500955..1502367 (-) 1413 WP_002856543.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  R8609_RS07655 (I12128_15320) ctsR 1502345..1502656 (-) 312 WP_002855438.1 hypothetical protein Machinery gene
  R8609_RS07660 (I12128_15330) nifJ 1502680..1506240 (-) 3561 WP_002934762.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  R8609_RS07665 (I12128_15340) - 1506333..1506974 (-) 642 WP_002934763.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 53094.65 Da        Isoelectric Point: 6.6184

>NTDB_id=105638 R8609_RS07650 WP_002856543.1 1500955..1502367(-) (ctsD) [Campylobacter jejuni strain IDH-12128]
MIRLILINILFCHYLYALDCQKRLFDISINEKLSIQESLDELAKYCSFSIIVKDKIAKEKLEILQNSVNIHQMSLDEIFN
FFIKEHDLSYDFDGKILRISGINTKIFKISYITSIREGQSITKASVDAKPRQSEYSGSFDDAEDNMIKSMEKFDFWQNIE
KEIIVLLKNSHEDYEAKTPIINPNAGLIIVTGTNSQLKSVKNYLQKLENRLKKQVIIDVSILAVSLNENHSSGINWQNFN
IGLNSQVNNENSFIQFQNGQGFVKNLGLRANLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGDTINYQVKESSK
GTENGTTVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRTIAPDTIQKKLSSVVQVENNQ
TLILGGLISHDKSNEKNSINFLSKIPILGSLFKGEVLNSKATEIVFIITPSIVDSVNAPSLKDLGFKHYE

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=105638 R8609_RS07650 WP_002856543.1 1500955..1502367(-) (ctsD) [Campylobacter jejuni strain IDH-12128]
ATGATAAGATTAATATTAATTAACATTCTTTTTTGCCATTATCTTTATGCTTTAGATTGTCAAAAGCGTCTTTTTGATAT
CAGTATTAATGAAAAATTAAGCATACAAGAAAGTCTTGATGAGCTTGCAAAATATTGTTCTTTTAGTATTATTGTTAAAG
ATAAAATTGCCAAAGAAAAATTAGAAATATTGCAAAACTCTGTCAATATTCATCAAATGAGTTTAGACGAAATTTTTAAT
TTTTTTATCAAAGAGCATGATCTTAGCTATGATTTTGATGGTAAAATTTTAAGAATTTCAGGCATTAATACGAAGATTTT
TAAGATAAGTTATATCACTTCTATCAGAGAAGGACAAAGCATAACTAAAGCGTCTGTAGACGCTAAACCAAGGCAAAGTG
AATATAGCGGTAGTTTTGATGACGCAGAAGACAATATGATTAAAAGTATGGAAAAATTTGATTTTTGGCAAAATATAGAA
AAAGAGATTATTGTATTATTAAAAAATTCTCATGAAGATTATGAGGCTAAAACTCCCATTATAAATCCCAATGCAGGTCT
TATTATAGTAACTGGAACAAATTCTCAGTTAAAAAGTGTGAAAAATTATTTGCAAAAACTAGAAAATCGTCTTAAAAAAC
AAGTTATTATCGATGTTAGCATACTTGCTGTGAGTTTAAATGAAAACCATTCTAGTGGGATTAATTGGCAAAATTTTAAT
ATAGGTTTAAATTCGCAAGTAAATAATGAAAATTCTTTTATTCAGTTTCAAAATGGGCAAGGTTTTGTTAAGAATTTGGG
TTTAAGGGCGAATTTAAATTTTGATTCTATTATTAACTTTCTTTCTCAAAATGGAAAAACTAGCGTGCTTTCTAATCCAA
AGCTTATGGCTTTAAATAACCAACAAGCCATTATTTCTGTAGGTGATACTATAAATTATCAAGTTAAAGAAAGTTCTAAA
GGCACTGAAAATGGGACTACTGTTAGTGAAAGTTATAACAATTATTCTATTTTTGTAGGCATTTTACTCAATATCTTGCC
TGAAATTTCTGATGATGGAAAAATAATGCTCAGGATTAATCCAAGCTTAAGTGATTTTAAGTATCCAGAAGATAATAAAC
GACAAAAAGAACCAAGAACTATTGCTCCTGATACCATACAAAAAAAGCTTTCTAGTGTTGTGCAAGTAGAGAATAATCAA
ACTTTAATTTTAGGTGGATTGATTTCTCACGATAAATCTAATGAGAAAAATTCTATCAATTTTCTATCAAAAATTCCAAT
CCTAGGTTCTTTGTTTAAAGGAGAAGTTTTAAATTCTAAAGCAACTGAAATTGTTTTTATTATCACTCCAAGTATAGTAG
ATAGTGTAAATGCTCCAAGTCTTAAAGATCTAGGATTTAAGCATTATGAGTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(281-454)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2R4CZP6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsD Campylobacter jejuni subsp. jejuni 81-176

100

100

1

Multiple sequence alignment