Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   R8609_RS07630 Genome accession   NZ_AP028412
Coordinates   1497036..1498217 (-) Length   393 a.a.
NCBI ID   WP_032584551.1    Uniprot ID   -
Organism   Campylobacter jejuni strain IDH-12128     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1492036..1503217
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8609_RS07600 (I12128_15210) - 1492581..1492922 (+) 342 WP_002869194.1 hypothetical protein -
  R8609_RS07605 (I12128_15220) flgM 1492985..1493182 (+) 198 WP_002792053.1 flagellar biosynthesis anti-sigma factor FlgM -
  R8609_RS07610 (I12128_15230) - 1493224..1493658 (+) 435 WP_002779263.1 flagellar protein FlgN -
  R8609_RS07615 (I12128_15240) flgK 1493668..1495494 (+) 1827 WP_002860346.1 flagellar hook-associated protein FlgK -
  R8609_RS07620 (I12128_15250) - 1495511..1496275 (+) 765 WP_002851318.1 TIGR02757 family protein -
  R8609_RS07625 (I12128_15260) - 1496279..1497043 (+) 765 WP_002860344.1 TSUP family transporter -
  R8609_RS07630 (I12128_15270) ctsF 1497036..1498217 (-) 1182 WP_032584551.1 type II secretion system F family protein Machinery gene
  R8609_RS07635 (I12128_15280) ctsE 1498214..1499773 (-) 1560 WP_032597243.1 GspE/PulE family protein Machinery gene
  R8609_RS07640 (I12128_15290) ctsX 1499763..1500350 (-) 588 WP_002934760.1 hypothetical protein Machinery gene
  R8609_RS07645 (I12128_15300) ctsP 1500354..1500962 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  R8609_RS07650 (I12128_15310) ctsD 1500955..1502367 (-) 1413 WP_002856543.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  R8609_RS07655 (I12128_15320) ctsR 1502345..1502656 (-) 312 WP_002855438.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 45744.32 Da        Isoelectric Point: 9.2580

>NTDB_id=105634 R8609_RS07630 WP_032584551.1 1497036..1498217(-) (ctsF) [Campylobacter jejuni strain IDH-12128]
MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRE
LYLMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGVSLPFITHAMLEIYNFLDDYGIFCIFLFVIFNVMLILAYKNFHSFAFSCDF
LFLKIPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFINSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLIFLEPMMTLFVALLVLFLALGIFLPMWELSSGVNFN

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=105634 R8609_RS07630 WP_032584551.1 1497036..1498217(-) (ctsF) [Campylobacter jejuni strain IDH-12128]
ATGAAATTTTATGAAGTGGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAGGCTGAAAATTTAAATACAGC
ACAAGCAAAAGCCTTATCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAAG
ATGAAAATTTTATACTCTTTTTTAAAGAGCTAGCTTTGTTGTGTGAAGTTGGGTTAAGTGTTCAAGAAGCGATTAGAGAA
TTATATCTTATGCACTCTTGTAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCCCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGTTAGCTTTGATTAAAACGGCTGAAAAGACAGGAAAAATCAGTGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTAAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCGTGAGTTTGCCTTTTATCACGCATGCAATGTTAGAAATTTATAATTTTTTAGATGACTATGGAATTTTTTGCA
TATTTTTGTTTGTTATTTTTAATGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAATACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCTAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAAATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTATTTTCTATGCTTAGCGTTGCGATGAAAAGTGGAAGACTTGAAGTATTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGTGAAAATTTGATGGATAGATTTTTGATTTTTTTAGAGCCTATGATGACTTTATTTGTAGCGCTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGCTCAGGGGTCAATTTTAACTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(261-382)

Type II secretion system (T2SS), protein F (T2SSF)

(60-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

98.214

99.746

0.98

Multiple sequence alignment