Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   R8609_RS07655 Genome accession   NZ_AP028412
Coordinates   1502345..1502656 (-) Length   103 a.a.
NCBI ID   WP_002855438.1    Uniprot ID   A0AA44HLF8
Organism   Campylobacter jejuni strain IDH-12128     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1497345..1507656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8609_RS07635 (I12128_15280) ctsE 1498214..1499773 (-) 1560 WP_032597243.1 GspE/PulE family protein Machinery gene
  R8609_RS07640 (I12128_15290) ctsX 1499763..1500350 (-) 588 WP_002934760.1 hypothetical protein Machinery gene
  R8609_RS07645 (I12128_15300) ctsP 1500354..1500962 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  R8609_RS07650 (I12128_15310) ctsD 1500955..1502367 (-) 1413 WP_002856543.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  R8609_RS07655 (I12128_15320) ctsR 1502345..1502656 (-) 312 WP_002855438.1 hypothetical protein Machinery gene
  R8609_RS07660 (I12128_15330) nifJ 1502680..1506240 (-) 3561 WP_002934762.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  R8609_RS07665 (I12128_15340) - 1506333..1506974 (-) 642 WP_002934763.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12475.38 Da        Isoelectric Point: 5.8722

>NTDB_id=105639 R8609_RS07655 WP_002855438.1 1502345..1502656(-) (ctsR) [Campylobacter jejuni strain IDH-12128]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=105639 R8609_RS07655 WP_002855438.1 1502345..1502656(-) (ctsR) [Campylobacter jejuni strain IDH-12128]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

100

1

Multiple sequence alignment