Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   ACLV7W_RS01565 Genome accession   NZ_OZ217346
Coordinates   320361..322340 (+) Length   659 a.a.
NCBI ID   WP_411865309.1    Uniprot ID   -
Organism   Streptococcus mitis isolate S. mitis D22     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 315361..327340
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV7W_RS01550 (SMID22_03140) - 317403..318848 (+) 1446 WP_125443775.1 LCP family protein -
  ACLV7W_RS01555 (SMID22_03150) - 318855..318959 (+) 105 Protein_285 CpsB/CapC family capsule biosynthesis tyrosine phosphatase -
  ACLV7W_RS01560 (SMID22_03160) glf 319055..320158 (+) 1104 WP_411865308.1 UDP-galactopyranose mutase -
  ACLV7W_RS01565 (SMID22_03170) amiA3 320361..322340 (+) 1980 WP_411865309.1 peptide ABC transporter substrate-binding protein Regulator
  ACLV7W_RS01570 (SMID22_03180) - 322482..323498 (-) 1017 Protein_288 ISL3 family transposase -
  ACLV7W_RS01580 (SMID22_03210) - 324935..325176 (-) 242 Protein_290 transposase family protein -
  ACLV7W_RS01585 (SMID22_03220) - 325397..326350 (-) 954 WP_411865311.1 aromatic acid exporter family protein -

Sequence

Protein


Download         Length: 659 a.a.        Molecular weight: 73029.62 Da        Isoelectric Point: 4.8299

>NTDB_id=1056313 ACLV7W_RS01565 WP_411865309.1 320361..322340(+) (amiA3) [Streptococcus mitis isolate S. mitis D22]
MKTRKVLALAGVTLLAAGVLAACSGGSATKGEQTFAFTYETDPDNLNYLTTGKAATADITSNVIDGLLENDKYGNLIPSM
AEDWSVSKDGLTYTYKIRQDAKWYTSEGEEYAPVKAQDFVTGLKYATDKKSEALYLVQDSIKGLDAYAKGENKDFSQVGI
KAIDDQTVQYTLNKPESFWNSKTTMGVLAPVNEEFLNSKGDDFAKATDPSSILYNGPYLLKSIVTKSAVEFAKNPNYWDK
DNVHIDKVKLSFWDGQDTSKPAENFKDGSLTAARLYPTSASFAELEKEMKDNIVYTQQDSTTYVVGTNIDRQSYKYTSKT
SEEQKTSTKKALLNKDFRQAIAFGFDRTAYASQLNGQTGASKILRNIFVPPTFVQADGKNFGDMVKEKLVTYGDEWKDVN
LADAQDGLYNPEKAKAEFAKAKSALQAEGVQFPIHLDMPVDQTATTKVQRVQSMKQSLEATLGTDNVIIDIQQLQKDEVL
NVTLFAQTAAGEDWDLSDNVGWGPDFSDPSTYLDIIKPSVGENTRTYLGFDSGKDNEAAKKVGLNDYDKMVNEAGEETTD
VTKRYNKYAEAQAWLTDSALVIPTTSKTGRPILSKMVPFTLPFSFSGNKGTSDPLRYKYLELQDKAVTADEYQKAQDKWM
KEKGESNKKAQEELAKHVK

Nucleotide


Download         Length: 1980 bp        

>NTDB_id=1056313 ACLV7W_RS01565 WP_411865309.1 320361..322340(+) (amiA3) [Streptococcus mitis isolate S. mitis D22]
ATGAAAACAAGGAAAGTATTGGCTCTTGCGGGAGTCACTTTATTAGCAGCTGGTGTCTTAGCGGCTTGTTCTGGTGGTTC
TGCTACTAAAGGTGAGCAGACTTTTGCATTTACCTATGAGACAGACCCAGATAATCTCAACTACTTAACAACTGGTAAGG
CAGCGACTGCTGATATTACTAGTAATGTGATTGATGGATTGCTTGAGAATGATAAATACGGGAACCTTATTCCCTCAATG
GCAGAGGACTGGTCAGTTTCTAAGGATGGCTTGACTTACACTTATAAGATTCGTCAGGATGCTAAGTGGTATACATCTGA
GGGAGAAGAGTATGCTCCTGTTAAGGCTCAGGACTTTGTGACAGGTCTTAAATATGCGACAGATAAGAAATCAGAAGCCC
TTTACTTGGTACAAGATTCAATTAAAGGTTTGGACGCATACGCTAAAGGGGAAAATAAAGATTTCTCTCAAGTTGGGATT
AAAGCGATTGACGATCAAACAGTCCAATACACTTTGAACAAACCTGAAAGTTTTTGGAATTCTAAAACAACCATGGGTGT
CTTGGCACCAGTTAATGAAGAGTTTTTGAACTCAAAAGGGGATGATTTTGCCAAAGCAACAGATCCAAGTAGTATCTTGT
ACAATGGTCCTTATTTGTTGAAATCTATTGTAACCAAATCTGCTGTTGAATTTGCGAAAAATCCTAACTACTGGGATAAA
GACAATGTCCATATTGACAAAGTGAAATTGTCATTCTGGGATGGTCAAGATACTAGTAAACCTGCAGAAAACTTTAAAGA
TGGTAGCTTAACAGCAGCTCGTCTCTATCCAACTAGTGCAAGTTTTGCAGAGCTTGAGAAAGAGATGAAGGATAATATTG
TCTATACACAACAAGATTCTACGACTTATGTAGTGGGGACAAATATTGACCGTCAGTCCTACAAATATACTTCTAAGACT
AGCGAAGAACAAAAGACATCTACTAAAAAGGCTCTCTTAAACAAGGATTTCCGTCAGGCGATTGCTTTTGGTTTTGATCG
TACGGCCTATGCCTCTCAGTTGAATGGACAAACTGGAGCAAGCAAAATCTTACGTAATATCTTTGTTCCACCAACATTTG
TTCAAGCAGATGGTAAAAACTTTGGAGATATGGTCAAAGAAAAATTGGTGACTTATGGGGATGAATGGAAGGATGTGAAC
CTTGCCGATGCACAAGATGGTCTTTACAATCCAGAAAAAGCCAAGGCTGAATTTGCCAAAGCCAAATCAGCTCTACAAGC
TGAGGGAGTACAATTCCCAATTCACCTAGATATGCCTGTTGACCAAACAGCAACTACAAAAGTTCAGCGCGTCCAATCTA
TGAAACAATCCTTGGAGGCAACTTTAGGAACTGATAATGTCATTATTGATATTCAACAGTTGCAAAAAGATGAAGTACTT
AATGTCACTTTATTTGCACAAACTGCTGCTGGCGAAGATTGGGATCTTTCTGATAACGTTGGATGGGGACCAGACTTCTC
AGATCCATCAACTTATCTTGACATCATCAAGCCTTCTGTAGGGGAAAATACGAGAACTTACCTAGGATTTGATTCAGGAA
AAGACAATGAGGCGGCTAAGAAGGTTGGTCTCAATGATTATGATAAAATGGTCAATGAAGCAGGTGAAGAAACTACAGAT
GTTACAAAACGTTATAACAAGTATGCCGAAGCTCAAGCTTGGTTGACAGATAGTGCCTTAGTCATCCCAACAACTTCTAA
AACTGGTCGTCCAATCTTGTCTAAGATGGTACCATTTACTTTACCTTTCTCTTTCTCAGGTAACAAGGGGACAAGCGATC
CGCTCCGATACAAATACCTTGAACTTCAAGACAAGGCAGTCACTGCAGATGAATATCAAAAAGCTCAAGATAAATGGATG
AAAGAAAAAGGAGAATCCAATAAAAAAGCGCAAGAAGAACTCGCAAAACATGTGAAATAG

Domains

Predicted by InterProScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

58.636

100

0.587
  amiA Streptococcus salivarius strain HSISS4

58.636

100

0.587
  amiA3 Streptococcus thermophilus LMG 18311

58.182

100

0.583